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3 protocols using 8 well glass bottom slides

1

Live-Cell Fluorescence Microscopy

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Live cells were imaged using a DMI6000B Leica inverted microscope, equipped with a 63X PLANAPO oil immersion objective (1.4 NA). mVenus and mCherry fluorescent filters were 490-510/515/520-550 nm and 540-552/560/567-643 nm (Ex./DC/Em.), respectively. Samples were prepared in TAP media using 8-well glass bottom µ-slides (Ibidi), covered with poly-L-lysine (Sigma). Images were acquired using LAS X software, and analyzed using ImageJ software.
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2

Immunofluorescent Staining of SCARF-1 in HSEC

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For immunofluorescent staining of SCARF-1 in HSEC, cells were cultured to confluence on rat tail collagen (RTC)-coated 8-well glass bottom µ-slides (Ibidi®), subsequently stimulated (see ‘HSEC stimulation’) and fixed in 4% paraformaldehyde (PFA). Alternatively, HSEC were cultured overnight in RTC-coated μ-Slides VI 0.4 (Ibidi®), stimulated for a further 24 h with 10 ng/ml TNFα and had 1 × 106 cells/ml CD4+ T lymphocytes perfused over them as described below (see ‘Flow adhesion assays’). HSEC and adherent CD4+ T cells were then fixed in 4% PFA. Following fixation, all cells were washed in PBS, permeabilised with PBS with 0.3% Tween® 20 for 5 min and then blocked in PBS with 10% goat serum for 20 min. The cells were then incubated at room temperature with anti-SCARF-1 (12 μg/ml; Abcam; ab92308) and anti-ICAM-1 (10 μg/ml; R & D; BBA3) primary antibodies, Alexa Fluor™ 633 Phalloidin (1 in 40; Invitrogen) or IMC antibodies diluted in PBS for 1 h. The cells were then washed with PBS three times and incubated with appropriate Alexa Fluor® conjugated secondary antibodies (1:250; Thermo Fisher Scientific). Nuclei were labeled with 300 nM DAPI. Cells were washed with PBS three times and left in PBS after final wash before imaging on a Zeiss 780 Zen confocal fluorescence microscope (ZEISS).
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3

Huntingtin Aggregation in U2OS Cells

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N-Terminal Htt model. Previous studies investigated N-terminal mut-Htt aggregation in transfected U2OS cells [20, 21] . The efficient transfection and the optimal morphological features of U2OS cells -large and flat, allowing imaging markers such as protein aggregates in different compartments -explain their widespread use in neuroscience studies [22, 23] . Here, U2OS cells (ATCC) were grown as we previously described [24] , using Dulbecco's Modified Eagle's Medium (DMEM; A1443001, Gibco), supplemented with 10 mM galactose, 5 mM HEPES and 1 mM sodium pyruvate (Sigma-Aldrich), plus 2 mM glutamine, 10% fetal bovine serum, and 1% penicillin/streptomycin (Gibco). In order to express the N-terminal Htt fragment, cells were transfected with plasmids encoding either 'wild-type' EGFP-Htt ex1 Q23 or 'mutant' EGFP-Htt ex1 Q74 (40261 and 40262, Addgene), using the Lipofectamine LTX Reagent (Invitrogen) as we previously described [24] . U2OS cells were seeded at 2 x 10 4 cells/cm 2 in 13 mm diameter coverslips (Thermo Scientific) and in 6-well plates (TPP) for immunofluorescence and protein extraction, respectively. For live imaging, cells were seeded at 4.5 x 10 4 cells/cm 2 in 8well glass-bottom µ-slides (Ibidi).
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