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9 protocols using mir 29a 3p mimic

1

Regulating VEGFA Expression in Endometrial Cancer

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HEC-1A and Ishikawa cells in the logarithmic growth phase were harvested. These cells were prepared into cell suspension with serum-free RPMI-1640 medium (1 × 106 cells/mL). A total of 1 mL cell suspension was seeded in 6-well plates. miR-29a-3p mimic and corresponding negative control (GenePharma, Shanghai, China) were respectively transfected into HEC-1A and Ishikawa cells (set as miR-29a-3p mimic group and miR-NC group, respectively). The full-length sequence of VEGFA was synthesized (GenePharma, Shanghai, China) and cloned into pcDNA3.1 plasmid (Invitrogen, Carlsbad, CA, USA) according to the instructions. HEC-1A and Ishikawa cells were subjected to cotransfection with miR-29a-3p mimic and pcDNA3.1-VEGFA plasmid (named miR-29a-3p mimic + pcDNA-VEGFA group). All transfection operations were performed strictly in line with the instruction of Lipofectamine 3000 (Thermo Fisher Scientific, Waltham, MA, USA). Cells were kept at 37 °C, 5% CO2 for 8 h. Subsequently, the residual liquid in each well was discarded. RPMI-1640 medium containing 10% FBS was used to culture cells for 48 h. HEC-1A and Ishikawa cells without transfection were cultured in RPMI-1640 medium containing 10% FBS (served as BLANK group).
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2

Ox-LDL Effects on VSMC Phenotype

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Human VSMCs from umbilical artery from American-type culture collection (ATCC; Rockville, Maryland) were cultured in DMEM (11965092, Gibco, New York, USA) plus 10% fetal bovine serum (10270-106, Gibco) at 37°C with 5% CO2. VSMCs were treated with different concentrations of ox-LDL (0, 25 μg/ml, 50 μg/ml, and 100 μg/ml). miR-29a-3p mimic, pcDNA3.1-TNFRSF1A, and their controls were purchased from the GenePharma (Shanghai, China). Cells were transfected with 30 nM oligonucleotides via Lipofectamine 2000 (11668019, Thermo, Shanghai, China).
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3

Transfection of BEAS-2B Lung Cells

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We cultured human lung epithelial cells, BEAS-2B [29 (link)], in bronchial epithelial growth medium BulletKit at 37°C in a 5% CO2 atmosphere. The cells were divided into 10 groups (Table 2). We subcultured the cells at a density of 1 × 105/mL. After culturing the cells in the presence of 10 ng/mL TGF-β1 for 48 h, we transfected them with plasmid. The CRNDE NC-lncRNA, CRNDE si-lncRNA, NC mimic, miR-29a-3p mimic, oe-NC, and oe-MCL-1 shRNAs were supplied by GenePharma. We transferred BEAS-2B cells onto plates for transfections following the manufacturer's instructions.
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4

Experimental procedures for cell culture and transfection

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MDA-MB-231 cells and HEK-293T cells were cultured in DMEM medium supplemented with 10% fetal bovine serum in a 5% CO2 incubator at 37 °C. T47D cells, MCF7 cells were obtained from the ATCC and cultured in RPMI-1640 medium supplemented with 15% fetal bovine serum in a 5% CO2 incubator at 37 °C. Cells were tested and authenticated in Beijing Microread Genetics Co., Ltd. (Beijing, China) by short tandem repeat (STR) profiling. All cell lines tested negative for mycoplasma contamination. MG132 (C2211) and CHX (C1998) were purchased from Sigma. Recombinant human Wnt-3a was purchased from R&D Systems. The transfection of miR-320a-3p mimic, miR-144-3p mimic, and miR-29a-3p mimic with miRNA control (miR-NC) (GenePharma, China) were performed according to the manufacturer’s instruction using Lipofectamine 3000 reagent (Invitrogen). The final concentration of miRNA was 20 nM. miRNA sequences are listed in Supplementary Table S2.
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5

Biotinylated miR-29a-3p Mimics Pulldown

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Biotinylated wild type (WT) or mutated (Mut) miR-29a-3p mimics were bought from GenePharma and incubated with C-1 magnetic beads (Invitrogen, USA) to obtain probe-coated beads. After indicated treatment for 24 h, PC12 cells were lysed and sonicated, followed by incubation with the probe-coated beads overnight at 4 °C. The supernatant was discarded and the precipitates were eluted. Then RNA expression was analyzed by qPCR assay [30 ].
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6

Transfection of HL-1 cells with miR-29a-3p

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We transfected the HL-1 cells with miR-29a-3p mimics (Genepharma, Shanghai, China) in accordance with the manufactures’ protocol and took fluorescein-conjugated scrambled siRNA as control. We transfected them in accordance with the manufacturer’s protocol. miR-29a-3p mimics were transfected into HL-1 with the help of lipofectamine 2000 (Invitrogen).
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7

Regulation of lncPVT1 and miR-29a-3p in Oxidative Stress

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MiR-29a-3p mimics and three siRNAs for knocking down lncPVT1 were synthesized by GenePharma (Shanghai, China). HTMCs were seeded in 6‐well plates and cultured under normal or H2O2-containing medium for 24 h (until 70%–80 % confluence). The cells were then transfected with lncPVT1 siRNA, MiR-29a-3p mimics, or the corresponding negative controls (NC) using Lipofectamine 3000 reagent (Invitrogen, Carlsbad, CA, USA). 6 h later, the medium was changed with fresh TMC medium, and incubation was continued.
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8

Transfection of MDA-MB-231 and MCF7 Cells

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In line with the supplier’s instructions, MDA-MB-231 and MCF7 cells underwent transfection using Lipofectamine® 3000 (Invitrogen; Thermo Fisher Scientific, Inc.). The cells were inoculated in a 12-well plate and cultured in DMEM-F12 containing 10% FBS without antibiotics. After pasted to the wall the next day, the old culture solution was discarded for transfection. Each liposome hole was added with, overexpression plasmid of circPVT1 (pcDNA-circPVT1), AGR2 (pcDNA-AGR2) and their pcDNA empty vectors (vector), short hairpin RNA (shRNA) against circPVT1 (sh-circPVT1) and its negative control (sh-NC), miRNA control (miR-NC), miR-29a-3p mimics, and miR-29a-3p inhibitors were purchased from GenePharma Co., Ltd. (Shanghai, China). qRT-PCR was performed to measure transfection efficiency. Finally, the cells were incubated for 24 hours (37°C, 5% CO2) and were subjected to further analysis.
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9

Luciferase Assay for miR-29a-3p

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We constructed reporter plasmids containing wild-type Luc-IGF1R (WT) and mutant Luc-IGF1R 3' UTR. miR-29a-3p mimics were synthesized by GenePharma Co., Ltd (Shanghai, China). We tested the luciferase activity of the indicated cells by Dual-Luciferase Reporter Assay System (Promega, Madison, WI, USA) 24 h after transfection, according to the manufacturer’s instructions.
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