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12 protocols using sodium bicarbonate

1

In Vitro Maturation of Porcine Oocytes

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The selected grade I COCs were cultured in Nunclon Δ 4-well dishes (Nunc, GmbH & Co. KG, Germany) in 500 μL standard porcine in vitro maturation (IVM) medium (TCM-199 with Earle's salts and L-glutamine, Gibco BRL Life Technologies, Grand Island, NY, USA) supplemented with 2.2 mg/mL sodium bicarbonate (Nacalai Tesque, Inc., Kyoto, Japan), 0.1 mg/mL sodium pyruvate (Sigma-Aldrich, St. Louis, MO, USA), 10 mg/mL BSA (Sigma-Aldrich,), 0.1 mg/mL cysteine (Sigma-Aldrich), 10% (v/v) filtered porcine follicular fluid, and gonadotropin supplements at final concentrations of 2.5 IU/mL human chorionic gonadotropin (hCG; Ayerst Laboratories, Inc., Philadelphia, PA, USA) and 2.5 IU/mL equine chorionic gonadotropin (eCG; Intervet, Whitby, ON, Canada). Wells were covered with a mineral oil overlay and cultured for 44 h at 38°C under 5% CO2 in air.
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2

Oocyte Maturation and Competence Assessment

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After 5 days of growth culture, oocytes were assessed for their meiotic competence. In vitro grown OCCs were recovered and further cultured in maturation medium (0.5 ml) in
4-well multi dishes (Thermo Fisher Scientific) in an atmosphere of 5% CO2 in air at 38.5°C for 48 h. The maturation medium was bicarbonate-buffered medium 199 supplemented with
2.2 mg/ml sodium bicarbonate, 0.08 mg/ml kanamycin sulfate, 0.1 mg/ml sodium pyruvate (Nacalai Tesque, Kyoto, Japan), 10% (v/v) fetal bovine serum, and 0.1 IU/ml human menopausal
gonadotropin (hMG; ASKA Pharmaceutical, Tokyo, Japan). After 48 h of maturation culture, oocytes were denuded by gently pipetting with 0.1% (w/v) hyaluronidase.
In some experiments, oocytes after growth culture were denuded and used to induce spontaneous maturation to eliminate the effect of cumulus cells on oocyte maturation. In addition, some
OCCs after growth culture were subjected to maturation culture with 10 ng/ml epidermal growth factor (recombinant human EGF: 236-EG; R&D systems) [34 (link)] instead of hMG.
OCCs containing growing oocytes before growth culture and OCCs containing in vivo grown oocytes were used as controls.
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3

CRC Cell Line HCT-116 Maintenance Protocol

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Human CRC cell line HCT-116 was obtained from the American Type Culture Collection (ATCC, USA). Cells were maintained in RPMI-1640 medium (R6504, Sigma-Aldrich, USA), supplemented with 2.0 g/L of sodium bicarbonate (Nacalai Tesque, Japan), 10% fetal bovine serum (FBS) (GE Healthcare, USA) and 1% penicillin-streptomycin solution (Nacalai Tesque Inc., Japan). Cells were maintained in a humidified New Brunswick CO2 Incubator (Eppendorf AG, Germany) at 37 °C under 95% air and 5% carbon dioxide. The medium was changed three times a week, and cells were passaged using 0.05% trypsin/EDTA solution (Nacalai Tesque Inc, Japan). Cell line authentication was performed using short tandem repeat (STR) profiling. Cells were routinely tested for mycoplasma contamination.
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4

Porcine COC In Vitro Maturation

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After the first BCB test, the BCB+ COCs were subjected to IVM. The COCs were cultured in Nunclon™Δ 4-well dishes (Thermo Fisher Scientific, Waltham, MA, USA) in 500 μL standard porcine IVM culture medium: TCM-199 (tissue culture medium) with Earle’s salts and l-glutamine (Gibco BRL Life Technologies, Grand Island, NY, USA), supplemented with 2.2 mg/mL sodium bicarbonate (Nacalai Tesque, Inc., Kyoto, Japan), 0.1 mg/mL sodium pyruvate (Sigma-Aldrich, St. Louis, MO, USA), 10 mg/mL BSA (Bovine Serum Albumin) (Sigma-Aldrich, St. Louis, MO, USA), 0.1 mg/mL cysteine (Sigma-Aldrich, St. Louis, MO, USA), 10% (v/v) filtered porcine follicular fluid, and gonadotropin supplements at final concentrations of 2.5 IU/mL hCG (human Chorionic Gonadotropin) (Ayerst Laboratories, Inc., Philadelphia, PA, USA) and 2.5 IU/mL eCG (equine Chorionic Gonadotropin) (Intervet, Whitby, ON, Canada). Wells were covered with mineral oil overlay and cultured at 38 °C under 5% CO2 in air for 22 h, and then for additional 22 h in medium without hormones. After cultivation, the second BCB staining test was performed, and BCB+ oocytes were used for further molecular analyses.
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5

Porcine Oocyte Maturation Protocol

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The IVM was conducted using oocytes that deemed positive in the first BCB test. Nunclon™Δ 4-well dishes (Thermo Fisher Scientific, Waltham, MA, USA) were used for the oocyte maturation in 500 μL standard porcine IVM culture medium: TCM-199 (tissue culture medium) containing Earle’s salts and l-glutamine (Gibco BRL Life Technologies, Grand Island, NY, USA), supplemented with 2.2 mg/mL sodium bicarbonate (Nacalai Tesque, Inc., Kyoto, Japan), 0.1 mg/mL sodium pyruvate (Sigma-Aldrich, St. Louis, MO, USA), 10 mg/mL BSA (Bovine Serum Albumin) (Sigma-Aldrich, St. Louis, MO, USA), 0.1 mg/mL cysteine (Sigma-Aldrich, St. Louis, MO, USA), 10% (v/v) filtered porcine follicular fluid, and gonadotropin supplements of 2.5 IU/mL hCG (human Chorionic Gonadotropin) (Ayerst Laboratories, Inc., Philadelphia, PA, USA) and 2.5 IU/mL eCG (equine Chorionic Gonadotropin) (Intervet, Whitby, ON, Canada) final concentrations. For the first 22 h of maturation, the well plates were overlaid with mineral oil and placed in 38 °C, 5% CO2. Then, the medium was changed for one without hormone supplementation, with the maturation allowed to proceed in the same conditions for another 22 h. Second BCB test was performed following the maturation, with BCB+ oocytes used for subsequent analyses.
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6

Inhibition of Aldose Reductase by Natural Compounds

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Dibasic sodium phosphate, sodium dihydrogen phosphate, D,L-glyceraldehyde, human recombinant aldose reductase (HR-AR), AG, quercetin, critric acid monohydrate, natrium carbonicum, sodium azide, gelatin and sulphuric acid were purchased from Wako Pure Chemical Industries, Ltd. (Osaka, Japan). Sodium bicarbonate, sodium chloride, potassium dihydrogen phosphate and ethanol were supplied by Nacalai Inc. (Kyoto, Japan). Tween 20, bovine serum albumin, glucose, O-phenylenediamine dihydrochloride, phosphate buffered saline, fetal bovine serum (FBS), steroyl myristoyl phosphatidylcholine glycine (SMPC Gly), 3-(4, 5-dimethylthazol-2-yl)-2, 5-diphenyl tetrazolium bromidetetrazolium salt (MTT) were purchased from Sigma-Aldrich company, Ltd. (St. Louis, MO, U.S.A.). NADPH was provided by Oriental Yeast Co., Ltd. (Tokyo, Japan). Anti-AGE antibody and goat anti-mouse IgG, HRP conjugate-secondary antibody Millipore (Merck U.S.A) were purchased from Transgenic Inc. (Hyogo, Japan). Silica gel 60 F254 TLC plates (Merck, U.S.A), silica gel 60 N (100–200 μm) and ODS were purchased from Kanto Chemical (Tokyo, Japan). DMSO was purchased from Wako Pure Chemical Industries, Ltd (Japan). Kaempferol-3-O-β-D-glucopyranoside was isolated from liquorice, and was identified by NMR and MS data [11 (link)].
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7

Propagation and Characterization of SK-L Cells with CSFV

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SK-L cells [25 (link)] were propagated with Eagle’s minimum essential medium (EMEM; Nissui Pharmaceutical, Tokyo, Japan) supplemented with sodium bicarbonate (Nacalai Tesque), 0.295% tryptose phosphate broth (Becton, Dickinson and Company, CA, USA), 10 mM N,N-bis-(2-hydroxyethyl)-2-aminoethanesulfonic acid (Sigma-Aldrich, St. Louis, MO, USA), and 10% horse serum (HS; Thermo Fisher Scientific, Waltham, MA, USA). This cell line was kindly provided from National Institute of Animal Health (Tsukuba, Ibaraki, Japan).
A recombinant clone of CSFV vALD-A76, derived from a virulent strain, ALD-A76, was used in this study. The vALD-A76 stain was previously established in our laboratory [26 (link)].
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8

Porcine Oocyte Maturation Protocol

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COCs were cultured in 4-well Nunclon™ plates in 500 μl of standard IVM porcine culture medium TCM-199 (tissue culture medium) with Earle salts and l-glutamine (Gibco BRL Life Technologies, Grand Island, NY, USA), supplemented with 0.1 mg/ml sodium pyruvate (SigmaAldrich, St. Louis, MO, USA), 2.2 mg/ml sodium bicarbonate (Nacalai Tesque, Inc., Kyoto, Japan) 10 mg/ml BSA, (SigmaAldrich, St. Louis, MO, USA), 0.1 mg/ml cysteine (Sigma-Aldrich, St. Louis, MO, USA), 10% filtered porcine follicular fluid (v/v) and gonadotropin supplements at final concentrations of 2.5 IU/ml of eCG (Intervet, Whitby, ON, Canada) and 2.5 IU/ml of hCG (Ayerst Laboratories, Inc., Philadelphia, PA, USA). All wells were flooded with a layer of mineral oil and maintained for 44 h at 38 °C in a 5% CO2 atmosphere. After maturation, for the maturity assessment the BCB staining test was repeated, with only BCB+ oocytes used for further study.
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9

Porcine Oocyte Maturation and BCB Staining

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The BCB+ COCs were matured in Nunclon™Δ 4-well dishes covered with mineral oil in 500 μl standard porcine IVM culture medium, TCM-199 (tissue culture medium) with Earle's salts, and L-glutamine (Gibco BRL Life Technologies, Grand Island, NY, USA) supplemented with 0.1 mg/ml sodium pyruvate (Sigma-Aldrich, St. Louis, MO, USA), 2.2 mg/ml sodium bicarbonate (Nacalai Tesque, Inc., Kyoto, Japan), 0.1 mg/ml cysteine Sigma-Aldrich (St. Louis, MO, USA), 10 mg/ml BSA (bovine serum albumin) (Sigma-Aldrich, St. Louis, MO, USA), 10% (v/v) filtered porcine follicular fluid and gonadotropin supplements at final concentrations of 2.5 IU/ml hCG (Ayerst Laboratories, Inc., Philadelphia, PA, USA), and 2.5 IU/ml eCG (Intervet, Whitby, ON, Canada). The COCs were cultured at 38°C under 5% CO2 in humidified atmosphere for 22 h and then for additional 22 h in medium without hormones. Thereafter, the BCB staining test was performed once again and only BCB+ oocytes were taken for the following analysis.
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10

Swine Kidney Cell Line for Virus Production

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The swine kidney-derived cell line (SK-L cells) [26 (link)] was cultured in Eagle’s minimum essential medium (EMEM) (Nissui Pharmaceutical, Tokyo, Japan) supplemented with 0.295% tryptose phosphate broth (TPB) (Becton Dickinson, Franklin Lakes, NJ, USA), 10 mM N,N-bis-(2-hydroxyethyl)-2-aminoethanesulfonic acid (BES) (Sigma-Aldrich, St. Louis, MO, USA), sodium bicarbonate (Nacalai Tesque, Kyoto, Japan), and 10% horse serum (HS; Thermo Fisher Scientific, Waltham, MA, USA). SK-L cells were used for viral production, titration, and serological tests. The cell line was incubated at 37 °C in 5% CO2.
A recombinant clone of CSFV live attenuated vaccine, vGPE, was derived from pGPE [22 (link)], and a plasmid containing its full-length cDNA was used. A CSFV vALD-A76 was also derived from the full-length cDNA clone of a virulent strain, ALD-A76, which was developed in a previous study [27 (link)].
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