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Rotor gene rg 3000 real time pcr machine

Manufactured by Qiagen
Sourced in Australia

The Rotor-Gene RG-3000 is a real-time PCR machine designed for nucleic acid detection and quantification. It features a rotor-based design and supports multiplexing of up to 72 samples simultaneously. The instrument provides real-time monitoring of fluorescent signals during the PCR amplification process.

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4 protocols using rotor gene rg 3000 real time pcr machine

1

Quantitative Real-Time PCR for Gene Expression

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Total RNA was harvested using TRIZOL reagent (Invitrogen) followed by DNase I treatment (Roche, Rotkreuz, Switzerland); 1.5 μg of total RNA was reverse transcribed using SuperScript Reverse Transcriptase III (Invitrogen) with random hexamers (Invitrogen) following the manufacturer’s instructions. The qPCR TBP forward and reverse primers for amplification are listed below. For quantitative real-time PCR, 2 μL of cDNA was analysed using a Rotor-Gene RG-3000 real-time PCR machine (Corbett Research, Sydney, Australia) with QuantiTect SYBR green (Qiagen, Manchester, UK). The cycling parameters were 95 °C for 15 min, followed by 45 cycles of 94 °C for 20 s, 58 °C–62 °C for 20 s and 72 °C for 20 s. TBP (F) TTC GGA GAG TTC TGG GAT TG TBP. (R) CTC ATG ATT ACC GCA GCA AA.
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2

Epididymal Adipose Tissue RNA Extraction and qRT-PCR

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Total RNA was extracted from the epididymal adipose tissue using an Easy‐Blue kit (Intron Biotechnology Inc) according to the protocol provided by the manufacturer. Then, total RNA was quantified with a NanoDrop‐2000 (Thermo Fisher Scientific). cDNA was synthesized (an equal amount of total RNA) with the Moloney murine leukemia virus transcriptase and Oligo (dT) 15 primers (Promega) using a Life Touch thermal cycler (Life Eco, Bioer Technology). The program was set for 1 hr of initiation at 42°C, followed by 10 min of incubation at 95°C and 10 min at 4°C. RT‐PCR was performed using the QuantiTect SYBR Green PCR kit (Qiagen), according to the manufacturer's instructions. cDNA was amplified for 40 cycles of denaturation (95°C for 30 s), annealing (57°C for 40 s), and extension (72°C for 40 s) using a RotorGene RG3000 real‐time PCR machine (Corbett Research). The purity of the PCR product was determined using melting curve analysis. The relative quantification of the expression of each gene was calculated using the comparative threshold cycle (Ct) method (Applied Biosystems). mRNA levels were normalized to β‐actin. Primer sequences are shown in Table 2.
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3

Epididymal Adipose Tissue: RNA Extraction and Gene Expression Analysis

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Total RNA was extracted from the epididymal adipose tissue using an Easy-Blue kit (Intron Biotechnology Inc., Seoul, Korea) according to the protocol provided by the manufacturer. Then, total RNA was quantified with a NanoDrop-2000 (Thermo Fisher Scientific, Wilmington, DE, USA). cDNA was synthesized (0.03 μg of total RNA) with the Moloney murine leukemia virus transcriptase and Oligo (dT) 15 primers (Promega, Medison, WI, USA) using a Life Touch thermal cycler (Life Eco, Bioer Technology, Hangzhou, China). The program was set for 1 h of initiation at 42 °C, followed by 10 min of incubation at 95 °C and 10 min at 4 °C. RT-PCR was performed using the QuantiTect SYBR Green PCR kit (Qiagen), according to the manufacturer’s instructions. The cDNA (20 μL) was amplified for 40 cycles of denaturation (95 °C for 30 s), annealing (57 °C for 40 s), and extension (72 °C for 40 s) using a RotorGene RG3000 real-time PCR machine (Corbett Research, Sydney, Australia). The purity of the PCR products was determined using melting curve analysis. The relative quantification of the expression of each gene was calculated using the comparative threshold cycle (Ct) method (Applied Biosystems, Foster City, CA, USA). mRNA levels were normalized to β-actin. Primer sequences are shown in Table 2.
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4

Quantitative RNA Analysis by RT-qPCR

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Total RNA was harvested using TRIZOL reagent (Invitrogen) followed by DNase I treatment (Roche). 1–2 µg of total RNA was reverse-transcribed using SuperScript Reverse Transcriptase III (Invitrogen) with random hexamers (Invitrogen), oligodT primer (for polyA+ RNA) or gene-specific reverse primer (Table S1). The qPCR primers for amplification of polyA+ RNAs were the following: β-actin (ex5F/ex6R), GAPDH (F/R3), γ-actin (γ-actin spliced F/R), FXN (ex3F/ex4R), FMR1 (ex14 F/ex 15R). For analysis of nascent RNA in Figures 2A and 4CFXN primer FXN D was used, while in Figure 3CFXN primer B was used. For quantitative real-time PCR, 2 µl of cDNA was analyzed using a Rotor-Gene RG-3000 real-time PCR machine (Corbett Research) with QuantiTect SYBR green (Qiagen). For analysis of nascent FXN-Luc RNA in HEK293 cells, lucR primer was used for reverse transcription, and in4F and ex5R were used for qPCR.
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