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5 protocols using cd11b clone icrf44

1

Flow Cytometry Immunophenotyping Protocol

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The following mAb were used for flow cytometry analysis: CD56 (clone NCAM1), CD16 (clone 3G8) CD3 (clone SK3), CD11b (clone ICRF44), CD14 (clone MOP9) PD1 (clone EH12.1), PD-L1 (clone MIH1), PD-L2 (clone MIH18), CD138 (clone MI15) MICA/B (clone 6D4), CD155 (clone TX24), NKG2A (clone 131,411), NKp44 (clone p44-8), TIM3 (clone 7D3), TIGIT (clone 741,182), DNAM1 (clone DX11) from BD Biosciences; HLA-ABC (clone W6/32), CD38 (clone HIT2), NKp30 (clone p30-15), NKp46 (9E2/NKp46), LAG3 (clone 11C3C65), NKG2D (clone 1D11), CD112 (clone TX31) from BioLegend; CD158a/h/g (clone HP-MA4), CD158e (clone DX9) from Thermofisher, CD158B (clone GL183) from Invitrogen, ULBP256 (clone 165,903) from R&D. All antibodies were titrated prior to usage. Briefly, cells were collected and washed once in PBS. Cells were stained with Aqua live dead cell staining (ThermoFisher) for 20 min at 4 °C, in the dark. Cells were washed once with PBS, containing 2% FBS. Surface staining was performed for 25 min at 4 °C, in the dark. Cells were washed with PBS, containing 2% FBS, centrifuged and fixed with 1% paraformaldehyde for 10 min. Acquisition was performed the following day with Beckman Coulter Cytoflex flow cytometers. Analysis was performed with FlowJo analysis software version 10. Gates were — unless otherwise specified – placed based on the unstained control or FMO (fluorescence minus one).
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2

Multi-color Immunophenotyping of Cells

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Cells were surface stained with anti-human antibodies (Abs) to CD11b (clone ICRF44), CD14 (clone TuK4), CD31 (clone M89D3), CD45 (clone 2D1), CD163 (clone GHI/61), IL-6 (clone MQ2-39C3), TNF-α (clone MAb11), vimentin (clone RV202) (BD Pharmingen, San Diego, CA), IL-8 (clone E8N1), CD326 (EpCAM, clone 9C4) (Biolegend, San Diego, CA), and CD3 (clone UCHT1, Beckman-Coulter, Miami, FL). Antibodies conjugated to the following fluorochromes were used in these studies: Fluorescein isothiocyanate (FITC), Phycoerythrin (PE), Peridinin chlorophyll protein (PerCP)-Cy5.5, PE-Cy7, Energy Coupled Dye or PE-Texas-Red conjugate (ECD), Pacific Blue, Brilliant Violet (BV) 570, BV605, BV650, Quantum dot (QD) 800, Alexa 647, allophycocyanin (APC)-Alexa 700 and APC-H7.
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Flow Cytometry Analysis of moDCs

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For flow cytometry analysis, moDCs were harvested, washed, stained, and analyzed by flow cytometry on a Fortessa cytometer (B&D). Live moDCs were defined by sequential gating by forward/side scatter, BV510 viability dye, single cells (SSC-A/SSC-H), and finally CD11b and CD11c (Figure S1). The CD11c+/CD11b+ population was analyzed for CD80, CD86, CD103, and MHCII, as described in [27 (link)]. The mean fluorescence intensity (MFI) of the aforementioned markers were normalized to the MFI from DCs that were unstimulated. MoDCs matured overnight with LPS (1 µg/mL) and FliC (1 µg/mL) were used as a positive control for staining for surface marker antibodies. The following antibodies were used: CD80 (clone 2D10.4), MHCII/HLA-DR (clone LN3), CD86 (clone IT2.2), CD11c (clone 3.9), and BV506 viability dye (Thermo Fisher), whereas CD103 (clone Ber-ACT8), and CD11b (clone ICRF44) were from B&D. All experiments were performed in triplicate, with three to four different blood donors.
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Investigating NDPK Effects on Hematopoietic Cells

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Bone marrow leukocytes were washed in RPMI 1640 supplemented with pen/strep (Gibco), and resuspended in RPMI 1640 supplemented with 1% v/v ITS+ Premix (Corning) and pen/strep (Serum-free media) at 1x106 cells/ml. Treatments were performed with 2μg/ml of rNM23-H1/rNDPKs, in the presence of 1.25μg/ml polymyxin B (Merck Millipore) (see also S1 Fig). Cells were incubated for 7 days and immunostained for flow cytometry (Antibodies: CD34, clone 581; CD117, clone: 104D2; CD11b, clone ICRF44 (BD Pharmingen) and 1:50 FcR Blocking Reagent (Miltenyi Biotec)). Cells were analyzed on a FACS Calibur (BD Pharmingen) in the presence of counting beads for live cells enumeration.
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5

Neutrophil Subset Analysis in TEVAR

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Approximately 5 mL whole blood samples were taken at admission before TEVAR surgery. Peripheral leukocytes, whole neutrophils, monocytes and lymphocytes were evaluated by Reflotron Plus Hematology Analyzer (Roche, Swiss). Ethylenediaminetetraacetic acid (EDTA)-anticoagulated blood samples from enrollments were processed for flow cytometry to determine the number of neutrophil subsets as previously described. After incubated with Fc-block (BioLegend, USA), cells were stained with CD66b (clone G10F5, BD Bioscience, USA), CD11b (clone ICRF44, BD Bioscience, USA), CD14 (clone M5E2, BD Bioscience, USA), CD101 (clone BB27, BD Bioscience, USA) and CD10 (clone HI10a, BD Bioscience, USA) for 15 minutes at room temperature. FSC/SSC gate was positioned to exclude cell debris, then total neutrophils were identified by CD11b, CD66b and CD14. Human circulating neutrophils could be categorized into three subpopulations: a numerically dominant CD10+CD101+ mature neutrophils, CD10CD101+ immature neutrophils and CD101 pre-neutrophils. FlowJo software (Version 10, USA) was conducted to analyze the data generated by flow cytometry.
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