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19 protocols using inverted phase contrast microscopy

1

Wound Healing Assay with IL-17A

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Ishikawa cells (5 × 105) were seeded into each well of 6-well plates and cultured to 90% confluence. The cell monolayer was scratched with a 10-μl pipette tip and washed three times with PBS. The cells were then treated with FBS-free culture medium containing 0, 5, 50 or 100 ng/ml IL17A (Peprotech), each for 24 h at 37°C. Scratch images were obtained at 0 h and 24 h using phase-contrast inverted microscopy (Olympus, Shinjuku, Japan) at 200 × magnification. Scratched areas were analysed using Image J software, version 1.47,13 (link) and area healing rate was calculated as: 1 – scratch area at 24 h/scratch area at 0 h.
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2

Evaluating MC3T3-E1 Cell Viability

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MC3T3-E1 cells (5 ϫ 10 3 cells/well) plated in 96-well plates that were cultured for Յ7 days were incubated with 10 L of CCK-8 (Beyotime Institute of Biotechnology, Shanghai, China) at 37°C for 1 h and visualized using phase-contrast inverted microscopy (Olympus). The absorbance [optical density (OD)] at 570 nm was measured using an automated microplate reader (Bio-Rad Laboratories), and the cell viability ratio was calculated using the GraphPad Prism 5.0 software (La Jolla, CA).
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3

In Vitro Evaluation of PJC Anticancer Activity

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The PJC anticancer effect was established in vitro using MDA (breast carcinoma), Caco-2 (colon carcinoma), and HepG-2 (hepatoma) cell lines, which were seeded into 3 microplates and incubated until attachment. Caco-2 and MDA cells were cultured and maintained in a DMEM medium supplemented with FBS, 10%, whereas HepG-2 cells were cultured and maintained in a supplemented RPMI-1640 medium with FBS, 10%. The cells were treated with PJC at different concentrations of 40, 80, 120, 160, 200, and 240 µg/mL and incubated for 24 and 48 h at 37 °C under 5% CO2 incubator. The anticancer effect of the PJC against the established cancer cell lines was assessed by the MTT method, as mentioned previously. The IC50 and EC100 values of PJC were measured by the GraphPad Prism 7.0, and the selectivity index (SI) value that was demarcated as the ratio of the IC50 on normal HSF cells against the IC50 value of each cancer cell line was assessed [38 (link)]. The effect of PJC on the morphology of Caco-2, HepG-2, and MDA cells was investigated using inverted phase-contrast microscopy (Olympus, Hamburg, Germany) at concentrations of 40, 80, and 160 μg/mL to obtain associations with untreated healthy cells.
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4

Levofloxacin Cytotoxicity Evaluation

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With various concentrations of levofloxacin (30, 60, and 90 μg/ml), the cells were incubated for 24 h. The cultured cells were observed by inverted phase-contrast microscopy (Olympus, Japan) and photographed with a digital camera (Nikon, Japan).
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5

Sphere Formation Assay for Evaluating Stemness

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The Lv-shRARβ A549 parental, Lv-shRARβ CD166+EpCAM+ and Lv-shRARβ A549 CD166-EpCAM- and non-infected cells (control). Briefly, the cells were re-suspended in a ratio of 1:1 (v/v) of growth factor-reduced Matrigel (BD Biosciences) attachment plate (Corning, Inc., Oneonta, NY, USA). The sphere was grown in serum-free DMEM-F12 (Gibco) supplemented with 20 ng/ml of epidermal growth factor (EGF), 10 ng/ml of basic fibroblast growth factor (bFGF), 1% B27 supplement (Invitrogen), and 1 % antibiotic-antimycotic (Gibco). The size and number of the formed spheroids were assessed after 21 days of culture using inverted phase-contrast microscopy (Olympus).
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6

Sphere Culture Assay Protocol

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Cells were seeded at a density of 106/wells in six-well ultralow attachment plates (Corning Inc, Corning, NY). Sphere culture system was constitute of MacCoy's 5A or DMEM, N2 supplement(Sigma Biochemicals, St. Louis, MO), 1% methylcellulose(Sigma Biochemicals, St. Louis, MO), 20 ng/ml EGF(PeproTech, Rocky Hill, NJ) and 20 ng/ml bFGF(PeproTech, Rocky Hill, NJ). Fresh aliquots of EGF and bFGF were added every two days. At 8–10 days, spheres containing at least 50 cells each were observed by inverted phase contrast microscopy (Olympus, Melville, NY).
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7

Estrogen and AKT Inhibition in TNF-α Induced Cell Responses

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Human NPCs were plated according to four groups: control, TNF-α (100 ng/mL), TNF-α (100 ng/mL) with pretreated 17β-E2 (10 um/L), TNF-α (100 ng/mL) with pretreated 17β-E2 (10 um/L) and MK2206 (10 um/L, inhibitor of PI3K/AKT pathway) in six-well plates at a density of 2×105 cells per well and cultured with complete culture medium. Upon reaching 90% confluence, the cells were cultured in serum free DMEM/F12 as four groups. The cells were observed by inverted phase-contrast microscopy (Olympus, Tokyo, Japan) and were photographed by digital camera (Nikon, Japan).
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8

Immunocytochemistry Analysis of Stem Cell Markers

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Immunocytochemistry was performed using the SABC method (Shi et al.1988 (link)): the culture medium was removed from adherent cells, and the cells were then fixed in 4% paraformaldehyde, incubated in a mixture of 30% hydrogen peroxide and pure methanol, incubated in goat serum, and then incubated with the anti-BDNF, anti-nestin, anti-NSE, and anti-GFAP (1:300 dilution for all; Wuhan Boster, Wuhan, China) primary antibodies overnight in a 4°C refrigerator. The following day, incubation with the HRP-labeled rabbit anti-mouse secondary antibody (Wuhan Boster, Wuhan, China) was performed after rewarming of the samples, followed by staining with streptavidin-biotin complex (SABC; Wuhan Boster) and 3,3′-diaminobenzidine (DAB; Wuhan Boster) and counterstaining with hematoxylin. The samples were then dehydrated, coverslipped, and sealed. We selected ten non-overlapping visual fields in each well by inverted phase-contrast microscopy (Olympus, Tokyo, Japan); positively dyed and total cells were then counted.
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9

Modulating miR-330-5p in PC Cells

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In brief, miR330-5p inhibitor or miR-330-5p mimic transfected PC cell migrations were detected using a wound-healing assay. The wound was generated in the cells with 90%–95% confluence by scratching the surface of the plates with a sterile pipette tip. The cells were then incubated in the absence or presence of 3 μmol/L ATO for 20 h and then photographed with an inverted phase-contrast microscopy (Olympus, Japan).
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10

Neuroprotective Effects of Liraglutide in High Glucose

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Human NPCs were purchased from American Science Cell Research Laboratories and cultured in NPC Medium (NPCM) containing 500 ml basal medium, 10 ml Foetal Bovine Serum (FBS), 5 ml NPC Growth Supplement, and 5 ml penicillin/streptomycin solution (P/S) (HyClone, Logan, UT, U.S.A.) at 37°C, 5% CO2 in a humidified incubator. The culture medium was refreshed the next day to remove unattached cells and residual DMSO (Solarbio, Beijing, China), and then it was changed every 2–3 days. When NPCs reached approximately 80–90% confluence, they were split and subcultured at a 1:3 ratio with a 0.25% (w/v) trypsin (Sigma, St.Louis, MO, U.S.A.) solution. The third-generation NPCs were randomly divided as follows: (1) Control (CON) group: cultured in NPCM; (2) HG group: cultured in 0.2 M HG concentration; (3) HG+LIR group: cultured in HG medium containing various concentrations of liraglutide (10, 100, or 1000 nM); (4) HG+LIR+LY group: cultured in HG medium containing liraglutide and LY294002 (LY, 20 μM). The cellular morphology was observed by inverted phase-contrast microscopy (Olympus, Tokyo, Japan). The cell vitality, apoptosis rate, reactive oxygen species (ROS) level, and the expression of GLP-1R, Akt, p-Akt, and caspase-3 of the groups were detected under the same experimental conditions after incubation for 48 h.
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