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8 protocols using con335

1

Lentiviral Transfection of PRNP

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Lentivirus of negative control (CON077) and LV-PRNP-RNAi (hU6-MCS-Ubiquitin-EGFP-IRES-puromycin), negative control (CON335) and LV-PRNP (Ubi-MCS-3FLAG-CBh-gcGFP-IRES-puromycin) were constructed by GENECHEM Biotech Co., Ltd. The HESC were digested and uniformly plant in 6-well plate, when the cells were cultured for 24 h, attached to the bottom of flask and grew to confluence of 50%, lentivirus and infection enhance reagent were added into the culture medium, and we exchanged the medium after 12 h of infection. 72 h later, the cells were inspected under the fluorescence microscope and analyzed by qRT-PCR or western blotting assay for evaluating the infection efficiency, then the infected cells were treated by puromycin for 7 days to select out the successfully infected cells.
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2

hnRNPA2B1 and NEAT1 Regulation

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Lv‐hnRNPA2B1 sequences were amplified and cloned into the GV492 vector (GeneChem, Shanghai, China), and sh‐hnRNPA2B1 sequences were cloned into the GV493 vector (GeneChem). The empty vectors CON335 (GeneChem, Shanghai, China) and CON313 (GeneChem, Shanghai, China) were used as the negative controls respectively. Viral transfection was performed in the indicated cells according to the manufacturer's instructions. To generate stable cell lines, after 72 h of transfection, cells were subjected to puromycin (Sigma, St. Louis, MO, USA) selection for 2 weeks. NEAT1 overexpression plasmid, pcDNA3.1‐NEAT1, was constructed by Tsingke Biotechnology (Beijing, China), and empty pcDNA3.1 vector (Tsingke Biotechnology, Beijing, China) was used as the control. Antisense oligonucleotides (ASOs) specifically targeting NEAT1 were purchased from RiboBio (Guangzhou, Guangdong, China). NEAT1 overexpression plasmid and ASOs were transfected into the indicated cells using jetPRIME transfection reagent (Polyplus Transfection, IIIkirch, France) following the manufacturer's instructions. The sequences used in this study are listed in Supplementary Table S3.
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3

Lentiviral Transduction of THP-1 Monocytes

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Lentivirus of negative control (CON335) and LV- LGALS9 (30842-14) were constructed by GeneChem Corporation (Shanghai, China). Transfection was performed according to the manufacturer’s protocol. Briefly, THP-1 monocytic cells were incubated in 1640 medium with 10% FBS. The cells were then transduced with the recombinant lentivirus in the presence of polybrene. Stably transfected cell lines expressing GFP were screened using puromycin. LGALS9 expression was subsequently evaluated using real-time PCR. The primers used for human LGALS9 were sense, 5′-TCTCCAGGACGGACTTCAGA-3′ and anti-sense, 5′-CACCAGGAAGCAGAGGTCAA-3′. The primers for the internal reference gene ACTB were sense, 5′-GCGTGACATTAAGGAGAAGC-3′ and anti-sense, 5′-CCACGTCACACTTCATGATGG-3′. Total RNA of cell lines from the control group THP-1_NC and experimental group LGALS9_OE were extracted using a RNeasy Mini Kit (Qiagen). Three replicates were used per treatment group in this study. After cDNA library preparation, the libraries were sequenced on Illumina HiSeq 2500 and the resulting FASTQ files were aligned to the human genome (GRCh38.74). Gene expression profile for the individual samples was thereafter calculated as RPKM values.
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4

Generating Stable HepG2 Cell Lines for ADAMTS16 and BMP2 Overexpression

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The human hepatoblastoma cell line, HepG2, was purchased from ATCC via the Shanghai Huiying Biological Technology Co., Ltd. The cell line was authenticated by human STR profiling and confirmed to be mycoplasma free. HepG2 cells were cultured in DMEM (Nanjing KeyGen Biotech Co., Ltd.) containing 10% fetal bovine serum (FBS; Biological Industries) and 1% penicillin-streptomycin (Nanjing KeyGen Biotech Co., Ltd.), and incubated in a humidified 5% CO2 incubator at 37°C.
The lentiviral vectors, GV513-ADAMTS16 (Ubi-MCS-CBh-gcGFP-IRES-puromycin) and GV358-BMP2 (Ubi-MCS-3FLAG-SV40-EGFP-IRES-puromycin), and the corresponding control lentiviruses containing the empty vector, CON335 and CON238, respectively, were purchased from Shanghai GeneChem Co., Ltd. Accession numbers for the two genes used in the present study are as follows: ADAMTS16, NM139056; BMP2, NM001200. For lentiviral infection, HepG2 cells were incubated with lentivirus at a MOI of 10 for 16 h, and the stable cell line was selected using 2 µg/ml puromycin for a week, followed by 2 µg/ml puromycin maintenance. The overexpression efficiency of ADAMTS16 and BMP2 were assessed through reverse transcription-quantitative PCR (RT-qPCR).
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5

Generating Lentiviral MET Constructs

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The MET (NM_000245) plasmid and its lentivirus were generated by GeneChem (Shanghai GeneChem CO., Ltd., Shanghai, China). The GV513 vector was used to construct a full-length c-MET plasmid and to complete the packaging of the lentivirus with Helper 1.0 and Helper 2.0 (Shanghai GeneChem CO., Ltd., Shanghai, China). Then, transfection of the lentivirus was conducted using HitransG A (Shanghai Genechem CO., Ltd., Shanghai, China), and the negative control virus CON335 (Ubi-MCS-CBh-gcGFP-IRES-puromycin, provided by Shanghai Genechem CO., Ltd., Shanghai, China) was used as a negative control virus. Cells were collected for further experiments 24 h after transfection, following the manufacturer’s recommendations. The sequences are listed in the additional Table S2.
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6

LMNA Overexpression via Lentivirus

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Lentivirus for negative control (CON335) and LV-LMNA (66639) constructed by Genechem (Shanghai, China) were used to trigger overexpression of LMNA. First, the optimal condition was selected, including optimal concentration, volume, treatment duration, and the number of cells using multiple treatments. After that, virus dilution in the fresh medium according to transfected cell density ratio and virus efficiency enhancer were added. Firstly, approximately 7000 cells/cm2 were cultures in 6-well culture plates. When the confluence reached 20 to 30 percent, we transfected the virus into the cells using the cell multiplicity of infection (MOI) and virus titer. The medium was replaced with a growth medium after 12 h, and expression efficiency was observed under an Olympus microscope (Tokyo, Japan).
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7

Lentivirus Transduction Protocol

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Lentivirus GV115-pGCSIL-004 with enhanced green fluorescence protein (EGFP) labeling, lentivirus CON335, and CON098 were purchased from Genechem (Shanghai, China). All the samples were diluted to 10-fold in phosphate buffered saline (PBS) and virus preservation solution with a total concentration gradient of 7.
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8

Overexpressing FHL2 in KGN Cells

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KGN cells were cultured till a confluence of 30%–40% was achieved and then transfected with lentivirus-mediated human FHL2 overexpression vectors (LV-FHL2[25555-1]) or control vectors (CON335), which were purchased from GeneChem Company (Shanghai, China). Two days following transfection, cells were selected with puromycin (5 μg/ml) for 7 days. Stable cell lines were examined for FHL2 expression by quantitative real-time polymerase chain reaction (qRT-PCR), immunoblotting, and green fluorescent protein (GFP) expression after transfection.
For rescue experiments, after establishing stable KGN cell lines carrying lentivirus-mediated FHL2 overexpression or control vectors, cells were transfected with AR siRNA using Lipofectamine 3000 for 48 h before analysis.
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