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16 protocols using fitc conjugated anti rabbit igg

1

Immunohistochemical Analysis of Nerve Regeneration

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Standard immunohistochemistry procedures were described previously 53 (link), 59 (link). The samples harvested at 5 days were labeled with the following primary antibodies: anti-S-100 (labeling SCs, 1:1000) and anti-LC3 (labeling autophagy, 1:1000), anti-MPZ (labeling myelin, 1:1000) and anti-GFAP (labeling dedifferentiated SCs, 1:500), anti-GFAP and anti-p75NTR (NGF receptor, 1:1000). The samples collected at 14 days were double-stained with anti-NF-200 (labeling axon, 1:100,000) and anti-MBP (myelin marker, 1:1000). The sections were sequentially incubated with FITC-conjugated anti-rabbit IgG (Abcam, ab150073) or TRITC-conjugated anti-mouse IgG (Abcam, ab7065). The statistical indicators of the immunofluorescence staining were measured in three randomly selected fields from one section, and a total of six sections from three animals of each group was used for capturing images with a Nikon confocal laser microscope (Nikon, A1 PLUS, Tokyo, Japan) or a Nikon Eclipse 80i fluorescence microscope. For different antibody immunoreactivity positive areas (%), the calculation formula used was IOD / selected region area*100%. The IOD and selected region area were measured using the Image pro-plus software.
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2

Immunofluorescence Imaging of SIRT3 and KIM-1

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For immunofluorescence (IF), 2 μm acetone-fixed cryostat sections and 4 μm paraffin sections were cut from the snap-frozen human kidney specimens and methyl Carnoy’s solution-fixed rat kidneys, respectively. The sections were incubated with the following primary antibodies: goat polyclonal to SIRT3 (1:100, Santa Cruz) and rabbit polyclonal to KIM-1 (1:100, abcam). To detect the primary antibodies, the sections were incubated with rhodamine-conjugated anti-goat IgG (1:100, abcam) for SIRT3, fluorescein isothiocyanate (FITC)-conjugated anti-rabbit IgG (1:100, abcam) for KIM-1. The nuclei were stained with 4′,6′-diamidino-2-phenylindole hydrochloride (DAPI). Sections were visualized using a Laser-Scanning Confocal Microscope (Olympus FluoView™ FV1000, Tokyo, Japan).
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3

Immunohistochemical and Immunofluorescence Analysis of TIM-1 and TIM-4 in Hepatocellular Carcinoma

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The tissues were fixed in 4% paraformaldehyde (Sigma-Aldrich) and then cut into 4-um sections, which were processed for immunohistochemistry as previously described [28 (link)]. Then, the sections were incubated with a primary antibody against human TIM-1 (Sigma-Aldrich). The staining was detected by a Dako-Cytomation Envision Horseradish Peroxidase System (DakoCytomation). Two independent observers who were blinded to the clinical outcomes evaluated the immunohistochemical variables.
For the immunofluorescence analysis, paraffin-embedded human HCC sections were stained with mouse anti-CD20 (Abcam) plus rabbit anti TIM-4 (Abcam) antibodies, followed by FITC-conjugated anti-rabbit IgG plus CY3-conjugated anti-mouse IgG antibodies (Abcam). Positive cells were detected by confocal microscopy (LSM 510, Carl Zeiss; ZEN 2010 software). All antibodies are listed in Additional file 4: Table S4.
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4

Immunofluorescence assay for Nrf2 detection

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The cells were fixed in 4% paraformaldehyde for 20 min and incubated in Triton-X100 for 10 min to penetrate the cell membrane. Next, a goat serum blocking solution was added to each well for 1 h. Next, the cells were incubated with rabbit anti-Nrf2 antibody (Abcam, Cambridge, MA, USA; 1:100) overnight at 4 °C and further incubated with fluorescein isothiocyanate (FITC)-conjugated anti-rabbit IgG (Abcam, Cambridge, MA, USA; 1:1000) for 1 h at room temperature in the dark, and images were captured under a fluorescence microscope (LEICA, Wetzlar, Germany).
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5

Collagen Binding Assay for Growth Factors

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A 48‐well culture plate was coated with 300 μg/ml of acid‐soluble type I collagen from the bovine tendon (Nano Zist Arayeh, Iran), as described in previous methods.27 The plate was blocked with 1% BSA in PBS‐T (PBS and 0.1% Tween 20) for 2 h at 37°C. In the next step, KGF and vibrioCBD‐KGF at 50 ng/ml concentration were added into separate wells and incubated at 37°C for 2 h. After extensive washing with PBS‐T, rabbit anti‐KGF antibody (Sigma, USA) was applied at 1:1000 dilution to the plate as the primary antibody. The plate was incubated overnight at 4°C and washed three times with PBS‐T. FITC‐conjugated anti‐rabbit IgG (1:1000, Abcam, UK) was added to the wells as the secondary antibody. Subsequently, the plate was incubated at 37°C for an hour, followed by three washes with PBS‐T. The interaction of proteins with collagen was visualized in the 48‐well plate under fluorescence microscopy (Labomed, USA). Scanning Electron Microscopy (SEM) and Picro‐sirius red staining were used to confirm that collagen was coated and remained on the surface of wells after washing processes.[28, 29]
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6

Immunofluorescence Analysis of Chondrocyte Phenotype

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The human OA chondrocytes were seeded on the cover slips in 6-well plates and then incubated for 24 h with or without NBP (0.1 μM). Next, the cells were rinsed in PBS and then fixed with 4% paraformaldehyde. Subsequently, the cells were permeabilized with 0.1% Triton X-100 and blocked with 5% bovine serum albumin. Furthermore, the cells were incubated with the primary antibodies against type II collagen (COLII, Abcam, 1 : 200), ACAN (Bioss, 1 : 100), and FoxO3a at 4°C overnight. Afterward, the cells were incubated with FITC conjugated anti-rabbit IgG (Abcam, 1 : 1000) or anti-mouse IgG (Abcam, 1 : 1000) for 1 h in the dark. The nuclei were stained with DAPI (Beyotime, China). Lastly, the cover slips were observed under a fluorescence microscope.
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7

Immunofluorescence Analysis of Chondrocyte Markers

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Cultured chondrocytes were rinsed in PBS, and then fixed with 10% neutral buffered formalin for 30 min at room temperature. Triton X-100 (Beyotime Biotechnology) was used to penetrate the cell membrane for 5 min, and donkey serum (Beyotime Biotechnology) was applied to block nonspecific binding sites for 1 h. Cultured cells were incubated with primary antibodies against type II collagen (Abcam; 1:200) and SOD3 (Santa Cruz Biotechnology; 1:100) at 4 °C overnight. The cells were then washed with PBS three times, and then incubated with fluorescein isothiocyanate (FITC)-conjugated anti-rabbit IgG (Abcam; 1:1000) or anti-mouse IgG (Biolegend, USA; 1:200) for 1 h. Nuclei were stained with Hoechst 33258 for 5 min. Finally, the samples were rinsed with PBS and visualized using confocal microscopy. LAS_X software (Flexera software LLC) was applied to quantify the fluorescence intensity of rat chondrocytes from at least 6 images.
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8

Immunofluorescent Staining of Cadherin-11 in PVNS FLS

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Cultured PVNS FLS were fixed in 4% paraformaldehyde for 15 min and incubated in Triton-X100 (Beyotime Biotechnology) for 10 min to penetrate the cell membrane. Next, a goat serum blocking solution (Beyotime Biotechnology) was added to each well for 1 h. Next, the cells were incubated with rabbit anti-cadherin-11 (Abcam, Cambridge, MA, USA; 1:100) overnight at 4°C and further incubated with fluorescein isothiocyanate (FITC)-conjugated anti-rabbit IgG (Abcam, Cambridge, MA, USA; 1:1000) for 1 h at room temperature in the dark. Finally, the samples were counterstained with phalloidin (Sigma, USA; 1:500) and DAPI (Sigma, USA; 1:1000) for 10 min, and images were captured under a fluorescence microscope (LEICA, USA).
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9

Visualizing P2X7R Expression in M Cells and FAE

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To characterize the expression of P2X7R in M cells and FAE, frozen section (10 µM in thickness) or whole-mount sample of PPs were stained with rhodamine-conjugated UEA-1, Alexa Fluor 350-conjugated WGA, NKM 16-2-4 (MBLI, Woburn, MA, USA), anti-P2X7R (Abcam, Cambridge, UK) followed by FITC-conjugated anti-rabbit IgG (Abcam) and then monitored by confocal laser scanning microscopy (CLSM) (LSM 510 META; Carl Zeiss, Thornwood, NY, USA).
To analyze the in vivo antigen targeting in whole mount sample, BALB/c mice were sacrificed 30 min after oral administration with EGFP-LL37 and PPs were excised from the small intestine. The PPs were washed with ice-cold PBS and whole mounted using 4% paraformaldehyde. After blocking with 1% BSA in 0.1% glycine, specimens were stained with NKM 16-2-4 followed by Alex Fluor 700-conjugated secondary antibody, and Alex Fluor 350-conjugated WGA and then analyzed by CLSM.
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10

Isolation and Characterization of Rat Endometrial Stromal Cells

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Endometrial stromal cells (ESCs) were isolated from uterine horns of 8- to 10-week-old female SD rats in the estrus phase according to previously described methods (11 (link)). Briefly, the tissue fragments were incubated in a 1:1 mixture of 0.25% Trypsin and 1 mg/ml dispase (Gibco, USA) medium for 60 min at 4°C, followed by digestion for 45 min at 23°C, and 15 min at 37°C. Trypsin activity was inhibited by adding ESC medium [DMEM/F12 containing 10% FBS and 1% penicillin–streptomycin (PS), Gibco, USA]. After rinsing three times with Hanks’ Balanced Salt Solution (HBBS), samples were subject to digestion with 1 mg/ml collagenase at 37°C for 30 min. Stromal cells were collected by passing the cell suspensions through a 40-μm nylon mesh, followed by centrifugation at 500 g for 7 min. Cell pellet was resuspended in ESC medium and plated at the desired density for passaging.
Immunocytochemical staining was performed to characterize ESCs by incubating cells with monoclonal mouse anti-vimentin antibody (1:1,000, ab8978, abcam) and monoclonal rabbit anti-Cytokeratin18 antibody (1:300, ab133263, abcam), respectively. TRITC-conjugated anti-mouse IgG (goat, 1:50, abcam) and FITC-conjugated anti-rabbit IgG (goat, 1:50, abcam) were used as secondary antibody as indicated.
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