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21 protocols using bdca2

1

Phenotypic Characterization of Dendritic Cells

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Fresh PBMCs were stained with fluorochrome-labeled anti-human CD11c, CD86, HLA-DR, OX40L, 4-1BBL (BD), Lin (Biolegend), CD40, CD45, CD80, CD1c/BDCA1, TLR4 (Beckman), 4-1BBL (Clinisciences), ICOS-L/CD275, TLR9 (eBiosciences), BDCA2, BDCA3 (Miltenyi), and GITRL (R&D systems) antibodies. TLR3 (Abcam), TLR8 (Novus) and TLR9 (eBiosciences) staining were performed using anti-human TLR after surface molecules staining and cell permeabilization. Fresh liver cell suspension (LMNCs) were stained with anti-human CD11c, CD86, HLA-DR (BD), Lin (Biolegend); CD40, CD45, CD80, CD1c/BDCA1 (Beckman), BDCA2 and BDCA3 (Miltenyi) antibodies. Stained cells were then analyzed using LSRII Flow Cytometer and FACSDiva software (BD). Isotype controls were used to discriminate positive cells from nonspecific background staining and dead cells were excluded with Live and Dead cell stain (ThermoFisher). Mean fluorescence intensity (MFI) was analyzed and shown only when the mean percentage of total positive cells was ≥30%. To ensure quality control during the study, we performed a systematic standardization of the fluorescence intensities using cytometer setup and tracking beads (BD).
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2

Intracellular Cytokine Characterization in HBV

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For intracellular cytokine characterization, 500 μl of fresh whole blood of HD or chronic HBV patients were cultured for 5 h with or without TLRs ligands alone or mixed together, comprising polyinosinic-polycytidylic acid (polyI:C, 100 μg/mL), Imiquimod (R848, 1 μg/mL) and Class-A CpG oligonucleotide ODN-2336 (CpGA, 50 μg/mL) (Invivogen). 1 μg/mL of Brefeldin A (BD) was added for the last 4 h. Subsequently, cells were stained for surface molecules with fluorochrome-labeled anti-human CD11c, HLA-DR (BD), Lin (Biolegend), CD45, CD1c/BDCA1(Beckman), Live and Dead (ThermoFisher), BDCA2 and BDCA3 (Miltenyi) antibodies. Cells were then fixed and permeabilized for intracellular cytokine staining using the fluorochrome-labeled anti-human TNFα, IL-12p40/70 (BD), IFNα (Miltenyi) antibodies and anti-human IFNλ1 (Novus) stained with mix-n-stain CF488 (Biotum). Cytokine-producing cell frequencies were analyzed by flow cytometry using LSRII Flow Cytometer instrument and FACSDiva software (BD).
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3

Comprehensive Flow Cytometry Immunophenotyping

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PBMCs were stained with fluorochrome-labeled anti-human antibodies or isotype-matched controls. T cells were defined with CD3/CD4/CD8/CD25 (BD), and Foxp3 (eBioscience) antibodies (Abs), and NK subsets were defined using CD3, CD16, and CD56 Abs (BD). The activation status was evaluated using the CD69 marker (BD). pDCs and mDCs were defined with BDCA2 (Miltenyi) and HLA-DR,/CD11c/Lin Abs (BD), and their activation status using CD40/CD80/CD86 Abs (BD). The stained cells were analyzed by flow cytometry using a FACSCantoII device equipped with Diva software (BD). Absolute numbers (cells/ml blood) were obtained by multiplying their percent by the total lymphocyte number. To ensure quality control during the study, we performed a systematic standardization of the fluorescence intensities using cytometer setup and tracking beads (BD).
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4

Phenotyping and Purity of Dendritic Cell Subsets

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The phenotype of pDC and CD1c+ mDC populations was determined by flow cytometry. DC purity was assessed by double staining CD11c+/CD1c+ for CD1c+mDCs (above 95%) and BDCA2/CD123 for pDCs (above 95%; all Miltenyi Biotec) [56 (link)]. The following primary monoclonal antibodies (mAbs) were used to determine the maturation state of the DCs: anti–CD80-APC, anti–PD-L1-APC (all BD Bioscience Pharmingen, San Jose, CA); and anti–CD40-PE (Beckman Coulter, Marseille, France). Measurements were performed on FACSCalibur and FACSVerse flowcytometers (BD).
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5

Immunofluorescence Analysis of Kidney Cells

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Paraffin-embedded human kidney sections and primary human renal proximal tubular cells (RPTECs) were stained or double stained for LMP7, MXA, p65, pNIK (Santa Cruz Biotechnologies, Santa Cruz, CA, USA) and BDCA2 (Miltenyi Biotec, Calderara di Reno, Italy). For each experiment, 3 × 105 cells were plated on a cover slip and fixed in 3.7% paraformaldehyde. The slides were incubated with the blocking solution, primary antibodies (anti-LMP7 1:500; anti-MXA 1:200; anti-p65 1:100, anti-pNIK 1:100 and anti -BDCA2 1:20) and the appropriate secondary antibodies (Alexa Flour 488 and 555 goat anti rabbit; Alexa Flour 555 and 488 anti mouse, Molecular Probes, Eugene, OR, USA). All sections were counterstained with TO-PRO-3 (Molecular Probes). Specific fluorescence was acquired using the confocal microscope Leica TCS SP2 (Leica, Wetzlar, Germany) using a 63 objective lens.
Quantification of p65 and pNIK nuclear fluorescence intensity was performed using Leica Software. We outlined cellular nuclei and then calculated the fluorescence intensity for p65 (green channel) and pNIK (red channel) within the nuclei. At least 10 cells in three different fields from each slide were measured to obtain the average quantification of nuclear signal intensity for p65 and pNIK.
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6

Comprehensive Immune Cell Phenotyping

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Unfractionated PBMCs and monocytes were isolated and treated as indicated. After incubation, cells were harvested and washed with PBS prior to staining with Zombie Aqua Viability Dye (Biolegend #423102). Cells were then stained with commercial antibodies against CD14 (Biolegend #301822, #325618, and #301830), PDL1 (Biolegend #329740), BDCA2 (Miltenyi Biotec #130-113-654), BDCA4 (Miltenyi Biotec #130-118-893), CD3 (Thermo Fisher #17-0036-42), CD4 (Biolegend #317426), CD8 (BD Biosciences #555367), CD56 (Biolegend #557699), CD19 (Biolegend #5577835), CD80 (Biolegend #305218), CD86 (Biolegend #374206), CD163 (Biolegend #333617), and CD206 (Biolegend #321120) at 4°C for 15 min. Antihuman CD16/32 was included to block Fc receptors. For intracellular staining, cells were fixed and permeabilized with eBioscience Intracellular Fixation and Permeabilization Buffer set (Thermo Fisher Scientific #88-8824-00), followed by staining with antibodies against indoleamine-2,3-dioxygenase (IDO; Thermo Fisher Scientific #50-112-9044) and CXCL10 (Miltenyi Biotec #130-104-963). Median fluorescence intensity for all markers were reported. All samples were assessed within 48 hours on the Becton Dickson LSR II flow cytometer. Data were analyzed using FlowJo V.10.2.
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7

Immunohistochemical Analysis of Skin Samples

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Skin samples were fixed in 10% formalin and embedded in paraffin. 5-µm sections were de-waxed and rehydrated. After quenching endogenous peroxidase, achieving antigen retrieval, and blocking nonspecific binding sites, sections were incubated with monoclonal antibodies against CD15 (BD-Pharmingen, Franklin Lakes, NJ, 1∶100 dilution), CD3 (BD-Pharmingen, 1∶20 dilution), BDCA-2 (Miltenyi Biotec, Bergisch Gladbach, Germany), Ki67 (Dako, Carpinteria, CA, mib1 clone, 1∶50 dilution), IL-17 (R&D Systems, Minneapolis, MN, 1∶40) and perforine (Leica Biosystems, Milan, Italy, 5B10 clone, 1∶20). Secondary biotinylated mAbs and staining kits were obtained from Vector Laboratories. Stainings were developed using 3-amino-9-ethylcarbazole (Vector Laboratories, Burlinagame, CA, USA). Slides were counterstained with hematoxylin. As a negative control, primary antibodies were omitted or replaced with an irrelevant isotype-matched monoclonal antibody. Figures depict one experiment that is representative of all the patients investigated (n = 10). Positive cells were counted in two visual fields per condition by two independent investigators in a blinded manner.
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8

Detailed Flow Cytometry Antibody Panel

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All flow cytometry antibodies used to determine DC and T cell purities as well as Th cell surface marker expression were purchased from BD Biosciences, except for BDCA-2 (Miltenyi Biotech). Antibodies were used at the proper concentration either as fluorescein isothiocyanate, phycoerythrin, peridinin chlorophyll protein, allophyocyanin, allophyocyanin-H7, Horizon 450, Horizon 500, Alexa Fluor 488 or Pe-Cy7. Intracellular IFN-γ staining was performed as described previously [48] (link). Analyses were performed with BD FACS Canto II and analyzed by BD FACSDiva Software v6.1.2 (BD Biosciences).
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9

Imaging Tumor-Infiltrating T Cells and pDCs

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Tumor tissues frozen in Tissue-Tek® O.C.T. (Sakura Finetek) were sectioned and stained by IHC with an antibody against murine CD3e. In total, 4 saline injected tumors and 4 CMP-001 injected tumors from 8 individual mice were sectioned and examined using a FLoid™ Imaging Station (Thermo Fisher Scientific). For confocal imaging, pDCs were isolated from human PBMC with the Plasmacytoid Dendritic Cell Isolation Kit II (Miltenyi Biotec) and incubated with A647-labeled CMP-001 alone or with recombinant anti-Qβ for 2hrs. Cells were then stained with a primary antibody against CD303 (BDCA-2; Miltenyi Biotec), followed by a secondary goat anti-mouse (Invitrogen). After staining, cells were fixed and cytospin processed and lastly were mounted with Vectashield® containing DAPI (Vector Laboratories). Imaging was performed on a Zeiss 710 confocal microscope and images were reconstructed using Imaris v9.5 software (Oxford Instruments).
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10

Maturation of Plasmacytoid Dendritic Cells

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To study the maturation of pDCs after TLR‐L stimulation, PBMC or tumor‐infiltrating cells were cultured in complete RPMI medium at 4 × 106 cells mL−1 for 20 h with or without a single or a mixture of TLR ligands including polyinosinic‐polycitidylic acid (polyI:C, TLR3L, 30 µg mL−1), Resiquimod (R848, TLR7/8L, 1 µg mL−1) and Class‐A CpG oligonucleotide ODN‐2336 (CpGA, TLR9L, 1.5 µm) (Invivogen, Toulouse). pDC subsets were depicted using anti‐CD11c, ‐HLA‐DR, ‐PDL1 (BD), ‐Lin, ‐CD45 (Biolegend), ‐BDCA2 (Miltenyi) and ‐CD80 (Beckman) Abs. The potential upregulation of the co‐stimulatory molecules on pDCs subpopulations was then investigated using the fluorochrome‐labelled anti‐human CD86 (BD) and CD40 (Beckman) antibodies. Dead cells were excluded with live and dead staining (Thermo Fisher Scientific). Analyses were performed using LSRII Flow Cytometer and BD FACSDiva Software v.8, RRID:SCR_001456 (BD). (BD).
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