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4 protocols using monochrome ccd camera

1

Quantifying Neuronal Activation via c-Fos Immunohistochemistry

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Immediately following relapse testing, animals were euthanized with Euthasol (1 mL/kg, i.p.) and transcardially perfused with 4% paraformaldehyde (PFA) following phosphate-buffered saline (PBS). Brains were extracted and kept in 4% PFA solution for 24 h, followed by 48 h in 20% sucrose in PBS. Brains were then frozen and kept in a ‒ 80 °C freezer until sliced on a cryostat at 30 μm. Free-floating Sects. (2 sections/region/rat) were blocked in 2% normal donkey serum followed by incubation in rabbit anti-Fos (1:10 000; EMD Millipore) overnight. During day two of the procedure, biotinylated donkey anti-rabbit secondary antibody (1:500; Jackson Immuno) was applied, followed by avidin–biotin complex (1:500; Vector Laboratories) and 3,3-diaminobenzidine (Vector Laboratories). The tissue was then mounted onto slides, air-dried, and cover slipped. Images were captured with a Tucsen monochrome CCD camera attached to an Olympus BX51 microscope. Bilateral images were acquired from 2 sections/region. Image J software (NIH) was used to quantify the number of c-Fos+ cells/mm2 within each region.
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2

Immunocytochemical Analysis of Cellular Markers

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Immunocytochemistry assessments were accomplished as described previously.23, 45 Briefly, cells of WiDr or SW48‐Dox lines were pretreated with Genz‐161 or transfected with siRNA‐Gb3 synthase (100 nM) for 48 hours, then placed (8000/chamber) in four‐chamber slides and cotreated with 100 nM doxorubicin for 48 hours in 5% FBS medium. After wash and fixation, cells were blocked with 5% goat serum in PBS for 30 minutes at room temperature, and then incubated with primary antibodies, anti‐p21 (1:200), ‐phosphorylated p53 (pp53), and ‐METTL3 (1:1500) in blocking solution, at 4ºC overnight. Corresponding Alexa Fluor 488‐conjugated anti‐mouse IgG and Alexa Fluor 555‐conjugated anti‐rabbit IgG (1:1000) were applied for further incubation to recognize the corresponding primary antibodies. After washing, cell nuclei were counterstained with DAPI (4̍,6‐diamidino‐2‐phenylindole) in mounting solution (Vector laboratories, Burlingame, CA, USA). Images (200 × magnification) were captured with an Olympus BX63 automated fluorescence microscope with monochrome CCD camera (Olympus, Tokyo, Japan). Alexa Fluor 488‐conjugated anti‐mouse IgG and Alexa Fluor 555‐conjugated anti‐rabbit IgG were purchased from Thermo Fisher Scientific.
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Automated Fungal Mycelium Morphology Analysis

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A stereoscopic microscope equipped with a monochrome CCD camera (Olympus Co., Japan) was used for image observation of the mycelia. The captured images were fed into a computer and analyzed using the image analysis software (Patent ID: 2011R11S044664.). The captured images were thresholded to obtain binary images. Opening was then applied to the binary images to improve their qualities. Repeated opening cycles were applied to each pellet until only the pellet core remained. Subtraction of the pellet core from the whole mycelia provided the filamentous part. For each sample, images of at least 20 colonies (pellet + filaments) were used to determine the morphological parameters. The average value was used to analyze the morphological parameters. The projected area of the whole mycelia (Am), area of the pellet core (Apc),equivalent diameters of the projected area of the whole pellet (Dm) and the diameter of pellet core were determined by the method developed by Koike et al. [26 ]. The fluffy degree of the pellet was given by Apc/Am. Fifty elements (defined as either pellets or dispersed filaments) were randomly selected in shake flasks, and then dried at 80°C to get the dry cell weight (DCW). We ideally regarded the mycelia as a regular sphere to obtain its volume. The compactness was determined as follows:
compactness=DCW/5043×π×(Dm2)3
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4

Quantifying METTL3 and Phospho-p53 in Cells

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Under the various treatment conditions, cells (50,000 cells/chamber) were grown in 4-chamber slides for 48 hr. After methanol fixation, cells were blocked with 5% goat serum in phosphate-buffered saline (PBS), and incubated with antibodies against METTL3 (1:2000 dilution) and phosphorylated p53 Ser15 (1:200 dilution) in blocking solution at 4°C, overnight. Primary antibodies were further recognized by Qdot 605- or Alexa Fluor 488-conjugated goat IgG (1:50 or 1:2000, respectively). Cell nuclei were counterstained with DAPI (4´,6-diamidino-2-phenylindole) in mounting solution (Vector Laboratories, Burlingame, CA, USA). Images (100 × magnification) were captured using an Olympus BX63 automated fluorescence microscope with monochrome CCD camera (Olympus, Tokyo, Japan). Alexa Fluor 488-conjugated goat anti-mouse IgG (H+L) and Qdot 605-conjugated goat anti-rabbit IgG (H+L) secondary antibodies were purchased from Thermo Fisher Scientific.
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