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52 protocols using dihydrorhodamine 123

1

Quantifying Oxidative Stress in Bacterial Cultures

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Freshly streaked C. difficile colonies were used to inoculate 5 mL of BHIS grown for 16 h at 37 °C. Cultures were subcultured 1:50 into fresh BHIS and grown for 6 h at 37 °C prior to the addition of heme and dihydrorhodamine 123 (Invitrogen) for 30 min at the indicated concentrations. Two hundred μL of culture was transferred to a 96-well plate and sealed with a Breathe-Easy gas permeable membrane (Diversified Biotech). Sealed plates were removed from the chamber and OD600 and fluorescence (excitation = 507 nm; emission = 529 nm) was measured at 10 min intervals on a Cytation 5 (BioTek) shaking in a double orbital at 567 cpm (3 mm) at 37 °C in atmospheric oxygen.
S. aureus ΔΔsod pOS1, pOS1_hsmA, and pOS1_hsmA_5His-Ala were diluted 1:50 into 200 μL TSB containing paraquat and dihydrorhodamine 123 (Invitrogen) at the indicated concentrations. OD600 and fluorescence (excitation = 507 nm; emission = 529 nm) were measured at 15 min intervals on a Cytation 5 (BioTek) shaking linearly at 567 cpm (3 mm) at 37 °C. The data displayed are background corrected for the wells with all components except cells and normalized to OD600.
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2

Quantification of Neutrophil RNS and ROS

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Production of reactive nitrogen species (RNS) by neutrophils was determined as described by the manufacturer of DAF-FM diacetate (invitrogen). Quantification of reactive oxygen species (ROS) was determined with Dihydrorhodamine 123 (invitrogen) and measured via flow cytometry according to manufacturer’s instructions.
Briefly: For measurement of reactive nitrogen species, 50 nM PMA (Sigma-Aldrich, Taufkirchen, Germany) and 5 μM DAF-FM diacetate were added to 2x105 neutrophils / well and cultured at 37°C for 45 minutes. Cells were washed with PBS and incubated for additional 15 minutes at 37°C before analysis by flow cytometry.
For quantification of reactive oxygen species, 2x105 cells were stimulated with 50nM PMA after a recovery time of 45min and 30 minutes later Dihydrorhodamine 123 was added at a final concentration of 2.5 μg/ml. Neutrophils were incubated for 15 minutes with Dihydrorhodamine 123 at 37°C and for 15 minutes on ice before measuring with a flow cytometer.
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3

Oxidative Burst Modulation in PMNs

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Freshly isolated human PMNs (2 × 106 cells/ml) were resuspended in PBS, supplemented with 0.2% BSA and 5 mM glucose, and incubated with dihydrorhodamine-123 (2 μM; Invitrogen) for 30 min at RT. Cells were then incubated with control IgG1 or with soluble or immobilized G97-A mAb (1, 2, 5, 10, and 20 μg/ml) for 30 min at 37°C in the absence or presence of N-formyl–Met–Leu–Phe (fMLF, 1 μM; Sigma-Aldrich), before being placed on ice to stop the reaction. The accumulation of H2O2 was measured immediately by flow cytometry on a FACSCalibur machine (BD Biosciences, San Diego, CA, USA), and data were analyzed with FlowJo software version 7.6.1 (Tree Star, Ashland, OR, USA). To measure myeloperoxidase (MPO) activity, cell lysate was collected and analyzed using the Myeloperoxidase Activity Colorimetric Assay Kit (BioVision, Milpitas, CA, USA) according to the manufacturer's recommendations.
For signaling inhibitor treatment, PMNs were pre-incubated with the indicated reagents at 37°C for 30 min: PD98059 (20 μM; Cayman Chemical, Ann Arbor, MI, USA), U0126 (10 μM; Promega, Madison, WI, USA), Bay 11–7082 (5 μM; InvivoGen, San Diego, CA, USA), SP600125 (20 μM; Sigma-Aldrich), SB203580 (20 μM; Cayman Chemical) or N-acetylcysteine (NAC, 10 mM; Sigma-Aldrich) before proceeding with the functional assay.
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4

Measuring Intracellular ROS Formation

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To demonstrate the formation of reactive oxygen species, cells were incubated with 500 nM dihydrorhodamine 123 (Invitrogen) for 20 minutes at the differentiation time points indicated. Intracellular ROS formation was proven by flow cytometric measurements detecting green fluorescence of the oxidized reagent rhodamine 123 as described above.
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5

Multiparameter Flow Cytometry of Monocytes and Neutrophils

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MDMs were detached by incubation with TrypLE™ Express solution (Life Technologies) at 37°C for 10 min. For the analysis of surface markers, monocytes and MDMs were incubated for 20 min with saturating concentrations of monoclonal antibodies against HLA-DR (BioLegend; clone L243), CD86 (BioLegend; clone IT2.2), CD206 (BioLegend; clone 15-2), and CD163 (BioLegend; clone GHI/61). Cells were also stained with dihydrorhodamine 123 and 4-amino-5-methylamino-2',7′-difluorofluorescein diacetate, all from Invitrogen.
For experiments with neutrophils, cells were stained with BD HorizonTM Fixable Viability Stain 450 (BD Biosciences), followed by the surface monoclonal mouse antihuman-conjugated antibodies: anti-CD15-PE (clone H198) and anti-CD11b-FITC (ICRF44) from BioLegend. Intracellular staining was performed after fixation and permeabilization with Fix/Perm kit (eBiosciences), with the antibodies anti-IL-1β-FITC (clone JK1B-1), anti-IL-6-APC (MQ2-13A5), anti-TNFα-APC (Mab11) from BioLegend, and anti-IL-10-FITC (BT-10) from eBioscience.
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6

ROS Production Measurement by Flow Cytometry

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ROS production was analysed using a modification of our previously described method [8 (link)]. ELISA plates were pre-coated (2h, 37°C) with/without IgG or F(ab´)2 at 10 μg/ml. Following washing and blocking of plates with 1%MP/PBS (1h, 37°C), wells were incubated (1h, 37°C) with 100μl patient or control serum (diluted 1 in 50 in media) prior to washing.
Granulocytes (1x106/ml) were incubated (15min/37°C) with ROS indicator Dihydrorhodamine 123 (Invitrogen, 5uM) then 200ul added per well of an ELISA plate either uncoated or coated as described above. Following incubation (1h/37°C), the MFI of green fluorescent rhodamine 123 was determined by flow cytometry.
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7

Quantifying Reactive Oxygen Species in Heart

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Reactive oxygen species were analyzed using fluorescent probe dihydrorhodamine 123 (Invitrogen; Thermo Fisher Scientific, IL, United States) applied to frozen heart sections. The sections were mounted and observed with fluorescent microscopy (i50 Eclipse, Nikon, Hamburg, Germany) at a final magnification of 400×. Twenty random fields from a total of five non-consecutive sections per animal were analyzed, and the fluorescence staining was calculated using an image analyzer (Image Pro Premier 9.1, Media Cybernetics, Rockville, MD, United States) and expressed as arbitrary units (AU). Two blinded investigators performed the analysis, and their evaluations were assumed correct if the values were not significantly different. If there was disagreement concerning the interpretation, the case was reconsidered in order to reach a unanimous agreement.
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8

Neutrophil Oxidative Burst Assessment

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Neutrophil oxidative burst activity was assessed in whole blood as previously described.14 (link) In brief, the oxidation of dihydrorhodamine 123 (Invitrogen, Burlington, Ontario, Canada) to rhodamine 123 was measured before and 5 min, 10 min and 15 min after stimulation with phorbol myristate acetate (PMA, 3.2×103 nM; Sigma-Aldrich Canada). The oxidation of dihydrorhodamine was quantified by flow cytometry. The stimulation index (SI) was calculated as follows: SI = (mean channel fluorescence time B − mean channel fluorescence time A) / (mean channel fluorescence time A).
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9

Neutrophil ROS Production Assay

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NeuPs or neutrophils were either sorted from the BM or cultured in vitro in the presence of G-CSF for 24 hours at 37 °C. Cells were stained with 5 μM dihydrorhodamine 123 (Invitrogen). N-acetylcysteine (NAC) was treated while staining with DHR123 to show the negative staining. ROS production was stimulated by treating cells for 30 minutes with E. coli (DH5α, multiplicity of infection (MOI) = 10) alone for the sorted cells or with Low-Tox-M Rabbit Complement (Cedarlane) and E. coli (DH5α, MOI = 10) for the cultured cells. Dead cells were excluded with DAPI and stained cells were analyzed on an LSRFortessa (BD Biosciences); data were analyzed using FlowJo software (Tree Star).
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10

Metformin Induces Apoptosis and Alters Mitochondrial Function in Lymphoma Cells

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Lymphoma cells were incubated at a cell density of 0.5 × 106/mL in complete media containing DMSO or metformin (16 mM). After 48 h, cells were stained with Annexin V and PI in Annexin binding buffer (Thermos Fisher, Grand Island, NY). Following staining, 10,000 events were collected on a FACScan (Becton Dickinson). Data were analyzed using the FCS express software (De Novo Software, Los Angeles, CA), and differences in apoptosis induction were compared using paired t tests in the SPSS 14.0 software (SPSS, Inc.).
RSCL and RRCL were exposed to DMSO or metformin (16 mM) for 48 h. Subsequently, cells were re-suspended in 0.5 ml of PBS containing 5 μmol/l of dihydrorhodamine 123 (Invitrogen) and incubated at 37 °C for 30 min in the dark. ROS was determined by flow cytometry analysis. To determine changes in the mitochondrial potential, lymphoma cell lines were exposed to metformin (16 mM) for 48 h, and 1 × 106 cells were incubated in DiOC6 (Thermofisher) at 37 °C for 30 min. The dose of DiOC6 used (20 nM) is within the ranges suggested by standard protocols. Scientists had doses ranging between 10 and 20 nM [30 (link), 31 (link)]. We used FCCP treatment as a positive control. Cells were then washed and re-suspended in PBS and data collected and analyzed via flow cytometry.
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