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5 protocols using horseradish peroxidase

1

Immunoblot Analysis of Retinal Proteins

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Immunoblot analysis was performed according to a standard protocol. Briefly, after determining protein concentrations (BCA Protein Assay Kit, Pierce, Rockford, IL), 1ug of detergent-soluble retinal proteins was separated on precast 12% SDS-polyacrylamide gels (Mini-Protein TGX, BIO-RAD, Hercules, CA) and transferred onto PVDF membranes (Immobilon-P, Millipore, Billerica, MA). Membranes were blocked with 5% non-fat milk and incubated with primary antibodies for Hsp70 (1:5000; Enzo, Farmingdale, NY), Hsp90 (1:5000; Enzo), Hsf1 (1:1000; Enzo) or Hsf2 (1:1000; Enzo) at 4°C overnight. Membranes were subsequently incubated with species-specific biotinylated antibodies (1:500; Enzo) and Horseradish Peroxidase (1:400; Enzo) for 1 hour at 4°C. Immunoreactive bands were detected with ECL Western Blotting Detection Reagents (GE Healthcare, Piscataway, NJ), and their intensities were quantified with NIH image software. Reprobing blots with a monoclonal antibody to a housekeeping beta-actin (1:10000; Sigma, St. Louis, MO) was used as an internal reference to normalize protein expression levels.
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2

Immunoblot Analysis of Retinal Proteins

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Immunoblot analysis was performed according to a standard protocol. Briefly, after determining protein concentrations (BCA Protein Assay Kit, Pierce, Rockford, IL), 1ug of detergent-soluble retinal proteins was separated on precast 12% SDS-polyacrylamide gels (Mini-Protein TGX, BIO-RAD, Hercules, CA) and transferred onto PVDF membranes (Immobilon-P, Millipore, Billerica, MA). Membranes were blocked with 5% non-fat milk and incubated with primary antibodies for Hsp70 (1:5000; Enzo, Farmingdale, NY), Hsp90 (1:5000; Enzo), Hsf1 (1:1000; Enzo) or Hsf2 (1:1000; Enzo) at 4°C overnight. Membranes were subsequently incubated with species-specific biotinylated antibodies (1:500; Enzo) and Horseradish Peroxidase (1:400; Enzo) for 1 hour at 4°C. Immunoreactive bands were detected with ECL Western Blotting Detection Reagents (GE Healthcare, Piscataway, NJ), and their intensities were quantified with NIH image software. Reprobing blots with a monoclonal antibody to a housekeeping beta-actin (1:10000; Sigma, St. Louis, MO) was used as an internal reference to normalize protein expression levels.
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3

Histological Analysis of Cartilage

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Cartilage samples were fixed with 10% neutral buffered formalin (NBF) for 24 h and decalcified using 0.5 M ethylenediaminetetraacetic acid (EDTA) solution for a week. After paraffin embedding, blocks were cut at 5 μM thickness and stained with safranin O. For immunohistochemical analysis, deparaffinized sections were incubated with primary antibodies overnight at 4 °C in a humidified chamber. Sections were developed using ImmPACT DAB (Vector Laboratories, #SK‐4105). The following antibodies were used for immunohistochemical analysis: PPARγ (1:100 dilution, Abcam, #ab41928), IL-1β (1:100 dilution, Abcam, #ab9722), Bodipy (1:50 dilution, Thermo Fisher Scientific), and horseradish peroxidase (HRP)-conjugated goat anti-rabbit IgG (1:200 dilution, Enzo Life Sciences, #ADI‐SAB‐300).
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4

Western Blot Protein Detection Protocol

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Cells were lysed with lysis buffer (Cell signaling technology, Danvers, MA, USA). Then, protein samples (20 μg) were separated by SDS-PAGE, and were blotted onto polyvinylidene difluoride membranes (BIO-RAD Laboratories, Hercules, CA, USA). After blocking with 1% (w/v) non-fat dry milk powder for 1 h, the membranes were incubated with primary antibodies overnight at 4°C, then with secondary antibody conjugated with horseradish peroxidase (Enzo Life Sciences, Inc., Farmingdale, NY, USA). Specific antigen-antibody complexes were detected by enhanced chemiluminescence using BioFx® Chemiluminescent Sensitive Plus HRP (SurModics. IVD. Inc., Eden Prairie, MN, USA). The specific band was visualized using Ez-Capture ST chemiluminescence imaging system (ATTO, Tokyo, Japan). Specific antibodies are presented in Supplementary Table 1. Experiments were performed in repeated three times with similar results.
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5

Western Blot Analysis of Protein Targets

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The cells were lysed in lysis buffer (cell signaling tech. Beverly, MA, USA) for 15 min on ice. The protein concentration of the lysates was measured using a Bradford assay (Bio-Rad, Hercules, CA, USA). Protein extracts (50 μg) were separated by 6% sodium dodecyl sulfate-polyacrylamide gel electrophoresis and were transferred onto polyvinyl difluoride membranes. After blocking with 2% skim milk for 1 h, the membranes were incubated with primary antibodies overnight at 4°C, then with secondary antibody conjugated with horseradish peroxidase (Enzo Life Sciences, Farmingdale, NY, USA) for 2 h. The membrane was visualized by Super Signal® West Pico Chemiluminescent Substrate (Thermo scientific, Rockford, IL, USA) and images were produced using medical X-ray film blue (Agfa health care NV, Belgium). Specific antibodies were as follows: p-glycoprotein antibody (Merck Millipore, Billerica, MA, USA), hENT1 (Novus Biologicals, Littleton, CO, USA), DNMT1 (R&D Systems, Minneapolis, MN, USA), DNMT3a (Abcam, Cambridge, MA, USA), DNMT3b (Abcam), and β-actin (Sigma, St. Louis, MO, USA).
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