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14 protocols using cyclopiazonic acid cpa

1

Comparison of Cellular Signaling Pathways

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Student’s t- test (for comparison of two sets of data) and one-way analysis of variance (comparison of three or more sets of data) were used. Data were analyzed using PRISM software and represented as mean±standard deviation. Post hoc testing was based on unpaired t-test with Bonferroni correction. Significance level was set at p<0.05.
Caffeine, sodium cyanide (NaCN), carbonyl cyanide-4-(trifluoromethoxy)phenylhydrazone (FCCP), sodium hydrogen sulfide (NaHS), S-Nitroso-N-acetylpenicillamine (SNAP), bromo-cDP-ribose (Br-cADPR-ribose), cyclopiazonic acid (CPA) were purchased from Sigma Aldrich Co. BTP-2 (also named YM 58483) and all receptor agonists were purchased from Tocris (Ellisville, MO, USA). Fura-2 AM was purchased from TEF Labs.
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2

Immunoprofiling of Oligodendrocyte Lineage

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The following antibodies and chemicals were used for this study: rabbit anti-α-tubulin (Abcam catalog #ab15246, RRID: AB_301787; 1:500), Rabbit anti-β3-tubulin (TUBB3; Covance catalog #MMS-435P, RRID: AB_2313773, 1:2000), mouse anti-MBP (BioLegend catalog #836504, RRID: AB_2616694; 1:1000), goat anti-Olig2 (R&D Systems catalog #AF2418, RRID: AB_2157554; 1:20), and mouse anti-O4 IgM (R&D Systems catalog #MAB 1326, RRID: AB_357617; 1:200). Alexa Fluor-conjugated secondary antibodies were all purchased from Thermo Fisher Scientific with a dilution of 1:500. nifedipine, verapamil, diltiazem, NNC 55-0396, ω-conotoxin GVIA (ω-CTX), ω-agatoxin IVA, SKF96365, cyclopiazonic acid (CPA), thapsigargin (Tg), and ryanodine (Ry) were all purchased from Sigma.
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3

Cell Culture Optimization for Cancer Research

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The HT29 cell line was obtained from LONZA (Basel, Switzerland). NCM460 cells were from INCELL Corporation (San Antonio, TX, USA). SW480 cells were a kind gift from Prof. Alberto Muñoz (CSIC, Madrid, Spain). Dulbecco’s modified Eagle’s medium (DMEM), penicillin, streptomycin, and fetal bovine serum (FBS) were sourced from Lonza (Basel, Switzerland). L-glutamine was from Gibco (Barcelona, Spain). Trypsin-EDTA was from LONZA (Verbiers, Belgium). Poly-L-Lysin was from Marlenfeld GmbH (Lauda-Könlgshofen, Germany). Six-well plates were from NUNC (Thermo Scientific, Waltham, MA, USA). Dishes 10 cm2 in diameter were from Corning (NY, USA). DFMO was from TOCRIS (Bristol, UK). Fura2/AM and qPCR primers are from Invitrogen (Eugene, OR, USA). Cyclopiazonic acid (CPA) was from Sigma-Aldrich (Steinheim, Alemania). Antibodies against MCU and β actin were from Sigma (Madrid, Spain). The RNA extraction kit was a GeneMATRIX Universal RNA Purification Kit from EURx (Gdansk, Poland). Clariom D human microarrays (Affymetrix) were supplied by CABIMER (Andalucía, Spain). RNA-seq (Illumina) was provided by Sistemas Genómicos S.L (Valencia, Spain). PolyamineRED was from Funakoshi Co., Ltd., Tokyo, Japan). All other reagents were obtained from Sigma and Merck.
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4

Bladder Smooth Muscle Contractility Assessment

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The different experimental rats were sacrificed at 4, 8 and 12 weeks respectively. Bladders were harvested and dipped into 4°C Krebs (containing 119 mM NaCl, 4.7 mM KCl, 1.2 mM KH2PO4, 1.2 mM MgSO4.7H2O, 25 mM NaHCO3, 2.5 mM CaCl2 and 11 mM glucose, pH adjusted to 7.35 with NaOH) solution immediately. The urothelium and submucosa layers were removed by using microinstruments under a microscope (Motic, SMZ-168 Series; China Group Co., Ltd., Xiamen, China; http://www.motic.com/Indu_Stereo/product_432.html) and were longitudinally cut into 3×3×8 mm strips from the ventral bladder. Bladder strips were fixed between electrodes and an automatic organ bath (Panlab; Harvard Apparatus, Holliston, MA, USA) containing 10 ml Krebs solution inflated with 95% O2 and 5% CO2 at 37°C, as described previously (16 (link)). Following 30 min, the SOCCs agonist cyclopiazonic acid (CPA, 10 µM) (Sigma-Aldrich; Merck KGaA) was added into the Krebs solution and the inhibitor SKF-96365 (10 µM; Sigma-Aldrich; Merck KGaA) was added into the Krebs solution after 5 min. The spontaneous contractive frequency and amplitude of BSM strips were recorded ~5 min for each intervention after the spontaneous contractions of bladder strips were detected by PowerLab system and the data were analyzed by LabChart version 7.3.7 (AD Instruments, Bella Vista, Australia).
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5

GABA-Induced Calcium Signaling in MDA-MB-231 Cells

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MDA-MB-231 cells plated on glass bottom cell culture dishes were loaded with the calcium-sensitive fluorescent dye Fluo-4/AM (4 mM; Invitrogen) in Hank's Balanced Salt Solution containing 0.02% pluronic acid (Sigma) for 45 min at 37 °C. GABA (Sigma), CGP (Santa Cruz), picrotoxin (Santa Cruz) and cyclopiazonic acid (CPA; Sigma) were applied at concentrations of 2 mM, 10 μM, 10 μM, and 10 μM, respectively. The Ca2+-free buffer contained 1 mM EDTA. Fluorescence was measured by an Olympus Confocal Laser Scanning Microscope (DU-897D-CS0) using MetaMorph software. Serial scanning was performed at 488/530 nm excitation/emission wavelengths at 1 s intervals. Fluorescence intensity changes (F%) were shown as the percentage of baseline fluorescence.
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6

Calcium Signaling Pathway Modulation

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Fura-2/AM was obtained from Invitrogen (Life Technologies; cat# F1221). BTP-2 (cat# 203890) and myo-inositol 1,4,5-trisphosphate hexakis (butyryloxymethyl) (InsP3BM) (cat# 3-1-145) were obtained from Calbiochem (Merk Millipore). All other chemicals were of analytical grade and were obtained from Sigma-Aldrich: cyclopiazonic acid (CPA) (cat# C1530), ATP (cat# A2383), caffeine (cat# C0750), R59949 (cat# D5794), ritanserin (cat# R103), phorbol 12-myristate 13-acetate (PMA) (cat# 79346), Gö-6983 (cat# G1918), U73122 (Cat# U6756, 2-Aminoethyl diphenylborinate (2-APB) (cat# D9754) and ionomycin (cat# I0634).
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7

Cyclopiazonic Acid Signaling Mechanisms

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Cyclopiazonic acid (CPA) was from Sigma (St. Louis, MO, USA) (catalog no. C1530). Fura-2 AM was from Thermo Fisher Scientific (Waltham, MA, USA) (catalog no. F1221). Fluoro-Jade® C was from Millipore (catalog no. AG325, lot 3170812). Amylo-Glo® RTD™ Amyloid Plaque Stain Reagent was from Biosensis (Thebarton, Australia) (catalog no. T3-300-AG, lot BA01-30-300 AGTK120419). Mounting medium Entellan® new was from Millipore (Burlington, MA, USA) (catalog no. 107961, lot HX42534561). Polyclonal rabbit monoclonal antibody against phospo-GluR1 Ser845 was from Millipore (catalog no. EPR2148; lot 2377032). Monoclonal antibody calcineurin (CaN) was from Sigma (St. Louis, MO, USA) (catalog no. C1956; lot 094M4820V). The housekeeping protein monoclonal mouse β-actin antibody was from Sigma (St. Louis, MO, USA) (catalog no. A54418, lot 122M4782). Secondary anti-rabbit and anti-mouse antibodies were conjugated with horseradish peroxidase (HRP; Sigma catalog no. A9169 lot 117M4808V and A9044 lot 055M4818V).
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8

Ion Channel Modulators Protocol

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LrB was synthesized by our group (Supplementary Scheme S1) and dissolved in DMSO. KV1.3 inhibitor ADWX-1 was purchased from More Biotechnology Co. Ltd. (Cat. MPK-001A, Wuhan, China) and dissolved in double-distilled water. Agonist of T cell - Concanavalin A (ConA) was purchased from MP Biomedicals (Cat. 195,283, Santa Ana, CA, United States) and dissolved in 1x Phosphate Buffer Saline (PBS). Calcium-ATPase inhibitor Cyclopiazonic Acid (CPA) was purchased from Sigma-Aldrich (Cat. C1530, St.Louis, MO, United States) and dissolved in DMSO. SKCa inhibitor Scytx was purchased from More Biotechnology Co. Ltd. (Cat. MPK-001C, Wuhan, China).
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9

Lipid Membrane Characterization and Calcium Signaling

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Cholesterol (chol), phosphatidic acid (PA), sphyngomielin, and 1,2-distearoyl-sn-glycero-3- phospho-ethanolamine-N [maleimide(polyethyleneglycol)-2000] (DSPE-PEG-mal) were from Avanti Polar Lipids Inc (Alabaster, AL, USA). Adenosine 5′-triphosphate disodium salt hydrate (ATP) and cyclopiazonic acid (CPA—1 mM stock in dimethyl sulfoxide—DMSO) were obtained from Sigma Aldrich (C1530–5MG).
mApoE peptide (CWGLRKLRKRLLR, MW 1698.18 g/mol) was synthetized by Karebay Biochem (Monmouth Junction, NJ, USA). Fura-2 acetoxymethyl ester (Fura2/AM - 1 mM stock in DMSO) was obtained from Thermo Fisher. This indicator has an emission peak at 505 nm and changes its excitation peak from 340 to 380 nm in response to Ca2+ binding.
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10

Cyclopiazonic acid protocol

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Cyclopiazonic acid (CPA) (Sigma-Aldrich) was prepared and aliquoted as stock solutions in dimethyl sulfoxide (DMSO) and stored at −20°C until use.
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