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21 protocols using paraformaldehyde (pfa)

1

Atorvastatin Reduces Liver Damage

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SM was obtained from Shanxi Taihang Pharmaceutical Co., Ltd. (Shanxi, China). Atorvastatin calcium salt trihydrate was supplied by Tokyo Chemical Industry Co., Ltd. (Tokyo, Japan). 12 hydration disodium hydrogen phosphate, potassium chloride, sodium chloride, potassium dihydrogen phosphate, and sodium dihydrogen phosphate were all purchased from Tianjin Zhiyuan Chemical Reagent Co., Ltd. (Tianjin China). The liver tissues of each mice were fixed in 4% paraformaldehyde at 4°C for 24 h, then the fixed tissues were embedded in paraffin and cut into 3-μm sections with a microtome (Leica, Nussloch, Germany). paraformaldehyde (analytical grade) was supplied by Damao Chemical Reagent Factory (Tianjin). Hematoxylin–eosin (H&E) and neutral gum were purchased from Beijing Legend Biotech Co., Ltd. (Beijing, China) and Shanghai Yiyang Instrument Co., Ltd. (Shanghai, China), respectively. Triglyceride, total cholesterol, glucose, LDL-C, and HDL-C were measured by commercially available kits obtained from Shanghai Rongsheng Biotech Co., Ltd., while insulin was detected using kits supplied by Wuhan Huamei Biological Engineering Co. Ltd. (Wuhan, China).
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2

Preserving ERK1/2 Activity for In Vivo Imaging

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To preserve the intact ERK1/2 activity in vivo for fluorescence microscopy, mice were transcardially perfused before isolation of brain tissue. Thirty minutes prior to transcardiac perfusion, mice were administered with 100/10 mg/kg ketamine/xylazine. Ten minutes prior to perfusion, 20 mg/kg SNC80 (i.p.) or a corresponding volume of saline was administered to the mice. Mice were then perfused with 30 mL of cold PBS and 4% paraformaldehyde (#100503-916, VWR) and were immediately decapitated to collect the brains. The brains were fixated in 4% paraformaldehyde overnight, dehydrated in 30% sucrose, and then embedded in Frozen Section Compound (#3801480, Leica). Frozen brains were sliced at a width of 30 μm using the Leica cryostat and permeabilized in 100% methanol at - 20 °C for 10 minutes. The slices were blocked in 5 % Normal goat serum (#S26-100ml, Millipore Sigma) for an hour then stained with primary antibodies as listed in table S6. For immunofluorescence labeling, the sections were incubated in the secondary antibodies according to the previously established protocol (89 (link)) and as listed in table S6. After the final washing, the nuclei of the sections were stained and the slices were mounted on a glass slide with Vectashield® (#H-1200, Vector lab). Images were acquired with a Nikon confocal microscope and assembled in Adobe Photoshop CS6 (Adobe).
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3

Chondrogenic Differentiation of MSCs

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The bone marrow-derived MSCs were collected in 15 mL centrifuge tubes containing approximately 2 × 105 per tube and subsequently cultured in chondrogenic differentiation medium (Gibco BRL, Grand Island, NY, USA). The medium was refreshed every three days. After 21 days of differentiation induction, the chondroid pellets were generated and washed with PBS and fixed in 4% paraformaldehyde, embedded with optimum cutting temperature (OCT) embedding material (Leica, Wetzlar, Germany). The pellets were sectioned using a freezing microtome, and subsequently, sulfated proteoglycans were visualized by staining with 1% toluidine blue (Merck, Darmstadt, Germany) for 10 min [27 (link)]. These slices were washed 3 times with PBS and photographed under an inverted microscope. The differentiation was confirmed as the appearance of alcian blue staining.
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4

Lysolecithin-Induced Focal Demyelination

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Focal demyelination was performed by stereotactic injection of Lysolecithin (LPC) (SIGMA-ALDRICH, St Louis, USA) as described previously (Cayre et al., 2013 (link); Magalon et al., 2007 (link)). The corpus callosum from healthy or demyelinated mice, from the ipsilateral and contralateral side to the LPC-induced lesion, were dissected 7 days post injection (dpi) from 1 mm thick coronal slices in cold Hank's Balanced Salt Solution (GIBCO by life technologie, Paisley, UK) and processed for RT-qPCR analysis (Ndst1 primers : exon 6 (forward, 5′-gctggacaagatcatcaatgg-3′) and exon 7 (reverse, 5′-acacagtacttctacgactatcc-3′); for Gapdh: exon1 (forward, 5’-gggttcctataaatacggactgc-3’) and exon2 (reverse 5’-ctggcactgcacaagaagat-3’). Primers from EUROFINS GENOMICS, Ebersberg, GERMANY). For histological analysis, mice were anesthetized and perfused with ice-cold 4% paraformaldehyde (FISHER SCIENTIFIC, Loughborough Leics, UK) in PBS (GIBCO by life technologie, Paisley, UK). Brains were post-fixed overnight in 4% paraformaldehyde in PBS and cut on a vibratome (Leica) in 4 series of coronal sections (50 µm thick) for immunofluorescence, or cryopreserved and cut with cryostat (20 µm thick) for in situ hybridization.
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5

Age-related Changes in Visual Cortex

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Mice were randomly separated into two experimental groups (n = 6 per group). Group 1 was composed of 4-month-old animals and group 2 was composed of 25-month-old mice.
The visual cortices of control and aged mice were obtained for IMHQ assays. Briefly, six animals from each group were transcardially perfused with 4% paraformaldehyde (Sigma-Aldrich Chemie, Germany) in 0.1 M phosphate buffer (J.T. Baker, NJ; PB, Tecsiquim; pH 7.4) for the immunohistochemistry assays. Male 4-month-old and 25-month-old C57BL/6J mice were evaluated in the study. Animals were perfused transcardially with phosphate-buffered saline (PBS) and 4% (w/v) paraformaldehyde under sedation. The brains were postfixed in 4% paraformaldehyde for 20 h and immersed in a 30% sucrose solution (w/v) in PBS for 24 h.
Coronal sections (20 μm) from visual cortex were cut on a freezing microtome (Leica CM3050s) and mounted serially. Slides were used for immunofluorescence detection.
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6

Spinal Cord Injury Histology and Analysis

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Eight weeks after the intervention, the animals were deeply anesthetized with isoflurane and transcardially perfused with saline followed by 4% paraformaldehyde (MilliporeSigma) in 0.1 M phosphate buffer (pH 7.2) or 2.5% glutaraldehyde in 0.1 M PBS. For histological examination and immunofluorescence, spinal cords (1 cm long for longitudinal sections and 0.5 cm long for transverse sections) centered at the injury epicenter were dissected and fixed in 4% neutral buffered paraformaldehyde for 24 hours, embedded in paraffin, and cut into 2.5-µm-thick slices using a microtome (Leica, Wetzlar, Germany). For western blot analysis, spinal cord tissue at the injury epicenter was flash frozen in liquid nitrogen.
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7

Hippocampal Brain Perfusion in C57Bl/6J Mice

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C57Bl/6J WT male mice (N = 8 for CON and N = 7 for ABA) and female mice (N = 7 for CON and N = 8 for ABA) were euthanized on the morning of P60, between 8:00 and 10:30 am. The mice were deeply anesthetized with urethane (i.p. 0.34 g/g body weight), then transcardially perfused with 0.1 M phosphate buffer (pH 7.4) containing 4% paraformaldehyde (PFA, EM Sciences, Hatfield, PA, USA). Glutaraldehyde-fixation was withheld until after immunocytochemistry, so as to optimize antigenicity. The brain of each mouse was removed from the skull, stored in 4% paraformaldehyde in 0.1M phosphate buffer, and later blocked for slicing on a vibratome (Leica VT1000M) into 50-μm sections (Leica Microsystems GmbH, Wetzlar, Germany). Coronal sections containing optimal cross sections of the dorsal hippocampus (Bregma −1.58 ~ −1.94mm) were collected.
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8

Perfusion and Brain Analysis in Hypertensive Rats

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After the experiments, the rats were deeply anesthetized with i.p. ketamine and xylazine (120 and 15 mg/kg body mass, respectively). Through the ascending aorta (right atrium cut), the rats were perfused with 100 mL (10 mL.min-1) of heparinized (10 U.mL-1) phosphate-buffered saline followed by 400 mL (10 mL.min-1) of cold 4% paraformaldehyde (Sigma-Aldrich, St. Louis, MO, USA) in PBS using a peristaltic metering pump (Milan, PR, Brazil). The brains were removed, post-fixed in paraformaldehyde for 48 h at 4°C, and transferred to a 30% sucrose solution at 4°C for 48 h. The brains were then cut on a cryostat (Leica Microsystems, Srt. Heidelberg, Germany) into 50-μm sections and stored at 4°C in a 0.9% saline solution until being mounted on glass slides. The brain slices were stained with 0.5% cresyl violet and examined under a light microscope. The positions of the thermistor tips were confirmed by comparing the sites of the brain lesions to the neural substrates described in Paxinos and Watson’s atlas (2007).
As shown in Fig 1 and Table 2, no differences were observed between the groups with regard to the stereotaxic coordinates at which the thermistor tips were positioned. These data indicate that the different Tbrain responses observed in the SHRs during exercise resulted from hypertension per se and not from the positioning of the thermistor tips.
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9

Nanofiber Scaffold Preparation for SEM Imaging

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Nanofiber scaffolds containing T17b eEPCs were washed with PBS first and fixed in multiple steps, starting with incubation in a 0.2 M sodium cacodylate trihydrate (Sigma Aldrich, Schnelldorf, Germany) buffer, containing 0.1% glutaraldehyde (Carl Roth, Karlsruhe, Germany), 2% paraformaldehyde (Carl Roth), and 5% sucrose (Sigma Aldrich, Schnelldorf, Germany) for 1 h at room temperature. In a second step, samples were placed in a 0.2 M cacodylate buffer, containing 0.3% glutaraldehyde and 3% paraformaldehyde for 1 h, followed by a series of ethanol dilutions in rising concentration, ending at 100 vol.%.
Fixed samples were then critical point dried with EM CPD300 (Leica Microsystems, Wetzlar, Germany), removed from Minusheets, gold-palladium sputtered, and examined using an AURIGA® scanning electron microscope (SEM) (Carl Zeiss, Jena, Germany).
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10

Cellular Uptake and In Vivo Liver Targeting of Extracellular Vesicles

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LX-2 cells were purchased from Zhong Qiao Xin Zhou Biotechnology Co., Ltd. (Shanghai, China) and seeded on 12-chamber slides (Corning, Kennebunk, USA) at a density of 50,000 cells per well. The next day, TEVs (10 μg/mL) previously stained with DiI (AAT Bioquest, USA) were added to the media for 24 h, then the cells were fixed with 4% paraformaldehyde (Wako, Japan) and nuclei were stained by DAPI (Biosharp, Hefei, China). Finally, the intracellular uptake of TEVs was analyzed using a fluorescence microscope (Leica Microsystems, Wetzlar, Germany).
To study TEVs taken up by liver tissue in vivo, healthy mice were orally administered with DiR-loaded TEVs (1 mg protein/kg) for 24 h, mice were sacrificed and liver tissues were fixed in 4% paraformaldehyde.
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