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30 protocols using anti cd3 145 2c11

1

Analyzing T Cell Cytokine Production in Nlrc3 Knockout Mice

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Splenocytes from WT and Nlrc3−/− mice were treated with ACK lysis buffer at room temperature for 1 min to remove red blood cells. Splenocytes were washed, counted and plated at 2 × 105 cells per well in a 96-well plate coated with 1 µg/mL anti-CD3 (145-2C11, Affymetrix eBioscience) and 1 µg/mL anti-CD28 (16–0281, Affymetrix eBioscience). Cells were cultured at 37°C with and without 20 ng/ml murine IL-2 (212-12, Peprotech) for 4 days. Brefeldin A (00–4506, Affymetrix eBioscience) was added to the media for 3 h, followed by washing in PBS, and staining with anti-CD4 (14–0042–85, Affymetrix eBioscience) and anti-CD3 (145-2C11, Affymetrix eBioscience) antibodies on ice for 20 min. Stained cells were fixed in 1% paraformaldehyde for 30 min on ice and permeabilized using permeabilization buffer (00–8333-56, Affymetrix eBioscience) according to manufacturer’s instructions. To detect intracellular cytokines, fixed cells were stained with anti-IFN-γ (50–7311, Tonbo) and anti-TNF (506322, Biolegend) for 30 min on ice. Flow cytometry were performed as described above.
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2

Analyzing T Cell Cytokine Production in Nlrc3 Knockout Mice

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Splenocytes from WT and Nlrc3−/− mice were treated with ACK lysis buffer at room temperature for 1 min to remove red blood cells. Splenocytes were washed, counted and plated at 2 × 105 cells per well in a 96-well plate coated with 1 µg/mL anti-CD3 (145-2C11, Affymetrix eBioscience) and 1 µg/mL anti-CD28 (16–0281, Affymetrix eBioscience). Cells were cultured at 37°C with and without 20 ng/ml murine IL-2 (212-12, Peprotech) for 4 days. Brefeldin A (00–4506, Affymetrix eBioscience) was added to the media for 3 h, followed by washing in PBS, and staining with anti-CD4 (14–0042–85, Affymetrix eBioscience) and anti-CD3 (145-2C11, Affymetrix eBioscience) antibodies on ice for 20 min. Stained cells were fixed in 1% paraformaldehyde for 30 min on ice and permeabilized using permeabilization buffer (00–8333-56, Affymetrix eBioscience) according to manufacturer’s instructions. To detect intracellular cytokines, fixed cells were stained with anti-IFN-γ (50–7311, Tonbo) and anti-TNF (506322, Biolegend) for 30 min on ice. Flow cytometry were performed as described above.
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3

Isolation and Activation of Murine T Cells

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Zebularine was purchased from Tocris Bioscience (UK). The recombinant mouse interleukin-6 (rmIL-6), rmIL-12, recombinant human transforming growth factor beta 1 (rhTGF-β1) were purchased from R&D Systems (USA). Functional antibodies anti-CD3 (145-2C11) and anti-CD28 (37.51), FACS antibodies anti-IL-17A (eBio17B7), anti-IFN-γ (XMG1.2) and anti-Foxp3 (FJK-16s) were from eBioscience (USA). CD4 (L3T4) and naïve CD4+ T cell Magnetic-activated cell sorting (MACS) isolation kits were purchased from Miltenyi (Germany). The complete Freund's adjuvant and pertussis toxin were purchased from Sigma-Aldrich (USA).
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4

Retroviral Transduction of T Cells

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The detailed protocol was described previously51 (link). PLAT-E cells were transfected with shRNAmir using TransIT-LT1 Reagent (Mirus). Retrovirus-containing supernatant was harvested after 48 h and mixed with 2-mercaptoethanol and polybrene (Millipore) for subsequent transductions. Purified naive OT-I CD8+ T cells were in vitro activated by anti-CD3 (145-2C11) and anti-CD28 (37.51) (eBioscience) for at least 18 h and then spinfected at 805 × g with retrovirus for 1 h at 37 °C. After 4 h incubation, the retrovirus-containing medium was replaced by T cell medium. Transduction efficiency were measured by flow cytometric analysis of ametrine-reporter after 24 h and 1 × 104 shRNA transduced cells were transferred into host mice followed by Lm-OVA infection. For Ncor1 shRNA knockdown, purified P14 CD8+ T cells were in vitro activated and transduced by shRNA retrovirus similarly to OT-I CD8+ T cells. Transduced P14 CD8+ T cells (5 × 105) were transferred into host mice followed by 1.5 × 105 pfu LCMV-C13 i.p. infection, which results in an acute infection51 (link). The full hairpin sequence for shRNA: shYy1: 5′-TGCTGTTGACAGTGAGCGCCCTCCTGATTATTCTGAATAATAGTGAAGCCACAGATGTATTATTCAGAATAATCAGGAGGTTGCCTACTGCCTCGGA-3′, shNr3c1: 5′-TGCTGTTGACAGTGAGCGAATGCATGATGTGGTTGAAAAATAGTGAAGCCACAGATGTATTTTTCAACCACATCATGCATGTGCCTACTGCCTCGGA-3′.
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5

Comprehensive Immune Cell Profiling

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Cell surface and intracellular stainings were performed using antibodies as follows: CD4 (RM 4–5; BioLegend), CD8 (53–6.7; eBioscience), CD43 (1B11; BioLegend), CD62L (MEL-14; BioLegend), CD11b (M1/70; BioLegend), KLRG1 (2F1/KLRG1; BioLegend), Ki67 (16A8; BioLegend), FasL (MFL3; BD Biosciences), TRAIL (N2B2; eBioscience), Foxp3 (FJK-16s; eBioscience), GzmB (GB12; ThermoFisher Scientific), GzmA (GzA-368.5; eBioscience) and Gzm K (Orb102688; Biorbyt). Dead cells were excluded by fixable viability dye (eBioscience) staining. For FasL staining, lymphocytes were isolated and restimulated with anti-CD3 (145-2C11, eBioscience) and anti-CD28 (37.51, eBioscience) antibodies for 5 hours at 37 °C. BD Cytofix/Cytoperm Fixation/Permeabilization kit was used for intracellular staining following the manufacturer’s instructions. Data were acquired on an LSR II flow cytometer (BD Biosciences). Analyses were done using FlowJo 5.0 software (Tree Star Inc., Ashland, OR).
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6

Naïve T cell to Treg Induction

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Naïve T cells (CD4+ CD62L+ CD44) from spleen and LN were purified using MagniSort-CD4+ T-cell enrichment kit (eBioscience) according to the manufacturer's instructions after which the purified cells were FACS sorted and were found to be over 98% pure at the post-sort purity check. Sorted cells were seeded in 24 (2.5 × 105) and 96-well plate (1 × 105) precoated overnight with 2 μg/ml of anti-CD3 (145-2C11) and 5 μg/ml of anti-CD28 antibodies (37.51) (eBioscience) in complete RPMI in presence of TGFβ (dose titrated, R&D systems), and IL-2 (0 or 10 ng/ml; eBioscience) for stimulation. Cells were cultured up to 5 days and collected at different time points for the flow cytometry analysis of Treg induction and expression analysis of Flatr and Foxp3 gene by Real time PCR.
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7

Isolation of HSC (LK+S+ cells) from Bone Marrow

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For HSC (LK+S+ cells) isolation, BM cells were firstly enriched for c-Kit expression by immuno-selection with CD117 conjugated micro-magnetic beads (Miltenyi Biotec) according to the manufacturer’s instructions. Enriched cells were then stained with PE-cy7 conjugated with a mixture of lineage antibodies (anti-CD3 145-2C11, Mac-1 M1/70, Gr-1 RB6-8C5, CD4 GK1.5, B220 RA3-6B2, CD8 53-6.7, Ter-119 TER119; all were purchased from e-Bioscience), PE conjugated Sca-1 (D7, e-Bioscience), APC conjugated c-Kit (2B8, e-Bioscience) and Percp-cy5.5 conjugated CD45.2 (104, e-Bioscience). Normal hematopoietic and leukemic cells were sorted by CD45.2 and GFP expression, respectively; and 4′,6-diamidino-2-phenylindole (DAPI) was used to exclude dead cells during the sorting procedure.
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8

T cell activation and BMDC generation

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293T cells were transfected using Effectene (Qiagen) with the indicated plasmids and grown in complete DMEM composed of DMEM (Life Technologies) supplemented with 10% FCS, 1 x sodium pyruvate, 1 x GlutaMAX, and 1 x penicillin-streptomycin solution (Sigma). All other cells were cultured in complete RPMI composed of RPMI (Life Technologies) supplemented as complete DMEM with the addition of 52μM 2-ME. Total T cells were purified from the spleens of indicated mice after red cell lysis using the EasySep Mouse T cell isolation Kit (Stemcell Technologies). For activation assays, cells were either cultured with 10ng/ml IL-7 (Peprotech) or 2μg/ml anti-CD3 (145-2c11, eBioscience) and 10μg/ml anti-CD28 (37-51, eBioscience) for up to 48hrs. BMDCs were generated by culturing the bone marrow from indicated mice at 2x105 cells/ml in complete RPMI with 20ng/ml GM-CSF (Peprotech). After 4 days the media was topped up with half the initial volume of the same media and the cells in suspension harvested after 7-8 days. Expression of CD11c was confirmed by flow cytometry (anti-CD11c, N418, eBioscience). For activation assays, 0.5x106 cells were cultured in 1 ml in a 48-well plate with either 20ng/ml GM-CSF alone or with the addition of 100ng LPS (Enzo) for 48hrs.
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9

CFSE-based CD8+ T-cell Proliferation Assay

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Splenic CD3+ cells obtained from Balb/c mice were sorted using a S3 Cell Sorter (Bio-Rad Laboratories). Sorted CD3+ T cells with high purity (> 95%) using an antibody (145–2 C11, eBioscience) were stained with 2.5 µM CFSE for 7 min at room temperature using a CellTrace CFSE Cell Proliferation Kit (Invitrogen). An equal volume of filtered-FBS was added to CD3+ T cells and incubated for 3 min. T cells were stimulated with 3 µg/mL anti-CD3 (145–2 C11, eBioscience) and 1 µg/mL anti-CD28 (37.51, eBioscience) antibodies and cocultured with MDSCs in complete medium for 72 hours. Then, CD8+ T-cell proliferation was analyzed by flow cytometry.
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10

Isolation and Culture of Regulatory T Cells

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Unless otherwise noted, lymphocytes were isolated from spleen and PLNs, that included inguinal, auxiliary and cervical lymph nodes, and naïve CD4+ cells (CD4+Foxp3-YFPCD44loCD62Lhi), Treg cells (CD4+Foxp3-YFP+), cTreg cells (CD4+Foxp3-YFP+CD44loCD62Lhi) and eTreg cells (CD4+Foxp3-YFP+CD44hiCD62Llo) were sorted on a MoFlow (Beckman-Coulter) or Reflection (i-Cyt). Sorted Treg cells were cultured in plates coated with anti-CD3 (145-2C11) and anti-CD28 (37.51; both from eBioscience) for 4 days in Click’s medium supplemented with β-mercaptoethanl, 10% (vol/vol) FBS, 1% (vol/vol) penicillin-streptomycin and 200 U/ml IL-2. In some experiments, rapamycin (50 nM), JQ-1 (500 nM), i-BET-762 (500 nM) and DCA (10 mM) were added to the culture.
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