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16 protocols using elexsys e500 epr spectrometer

1

CW-EPR Spectroscopic Measurements

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CW-EPR measurements were performed by using a Bruker E500 ElexSys EPR spectrometer and ER4123SHQE X-band cavity resonator, and T values calibrated and measured, as described.66 (link) EPR acquisition parameters: Microwave frequency, 9.5 GHz; microwave power, 0.2 mW; magnetic field modulation, 0.2 mT; modulation frequency, 100 kHz; acquisition number, ≥2 spectra were averaged at each T value.
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2

Continuous-wave EPR Spectrometry

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Continuous-wave EPR measurements were performed by using a Bruker E500 ElexSys EPR spectrometer and ER4123SHQE X-band cavity resonator as described.14 (link) EPR acquisition parameters: Microwave frequency, 9.45 GHz; microwave power, 0.2 mW; magnetic field modulation, 0.2 mT; modulation frequency, 100 kHz; acquisition number, 4–8 spectra were averaged at each T value.
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3

Substrate Radical Decay Kinetics by EPR

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EPR spectra were collected by using a Bruker E500 ElexSys EPR spectrometer equipped with a Bruker ER4123 SHQE cavity. Instrumentation and methods for measurements of the substrate radical decay kinetics by EPR have been described in detail.8 (link) Briefly, EPR samples were held at a staging temperature of 160–180 K in the ER4131VT cryostat system in the spectrometer, and temperature was step-increased to the decay measurement values. The time from initiation of the temperature step to the start of acquisition of the first spectrum was 30–60 s. Continuous acquisition of EPR spectra proceeded for the duration of the decay (24 s sweep time; 2.56 ms time constant; sampling interval, 5–60 s, depending on T). Temperature at the sample was determined by using an Oxford Instruments ITC503 temperature controller with a calibrated model 19180 4-wire RTD probe, which has ±0.3 K accuracy over the range of decay measurements. The ER4131VT cryostat/controller system provided a temperature stability of ±0.5 K over the length of the EPR sample cavity. The temperature was therefore stable to ±0.5 K during each run.
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4

EPR Spectra Acquisition and Decay Kinetics

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EPR spectra were collected by using a Bruker E500 ElexSys EPR spectrometer equipped with a Bruker ER4123 SHQE cavity. Instrumentation and methods for measurements of the substrate radical decay kinetics by EPR have been described in detail.28 (link) Briefly, EPR samples were held at a staging temperature of 160–180 K in the ER4131VT cryostat system in the spectrometer, and temperature was step-increased to decay measurement values of 203–230 K. The time from initiation of the temperature step to the start of acquisition of the first spectrum was 30–60 s. Repetitive acquisition of EPR spectra (24 s sweep time; 2.56 ms time constant) proceeded for the duration of the decay. The temperature at the sample was determined by using an Oxford Instruments ITC503 temperature controller with a calibrated model 19180 4-wire RTD probe, which has ±0.3 K accuracy over the range of decay measurements. The ER4131VT cryostat/controller system provided a temperature stability of ±0.5 K over the length of the EPR sample cavity. The temperature was therefore stable to ±0.5 K during each run.
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5

X-band CW-EPR Spectroscopy Protocol

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X-band CW-EPR measurements
were performed by using a Bruker E500 ElexSys EPR spectrometer and
ER 4123SHQE X-band cavity resonator with temperature calibration and
control, as described,41 (link) by using the following
acquisition parameters: microwave frequency, 9.5 GHz; microwave power,
0.2 mW; magnetic field modulation, 0.2 mT; modulation frequency, 100
kHz. Four to eight spectra were averaged at each temperature.
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6

EPR Dosimetry with BRUKER E500 Spectrometer

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The EPR signals are obtained using a BRUKER E500 EleXsys EPR spectrometer operating at X-Band and equipped with a standard ER4102ST resonator cavity. Each dosimeter is placed in the microwave cavity inside of a glass tube with flat bottom. The spectrometer settings were: power 20 mW, modulation frequency 100 kHz, modulation amplitude 1.2 mT, receiver gain 60 dB, sweep width 3 mT and sweep time 168 s, resulting in a spectrum shape shown in Figure 1. No external reference was used in the resonator but to reduce possible instabilities of the spectrometer along the day, each dosimeter is read three to four times in a rotational schedule.
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7

Continuous Wave EPR Spectroscopy of CYP144A1

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Continuous wave X-band electron paramagnetic resonance (EPR) spectra of CYP144A1 proteins were obtained at 10 K using a Bruker ELEXSYS E500 EPR spectrometer equipped with an ER 4122SHQ Super High Q cavity. Temperature control was effected using an Oxford Instruments ESR900 cryostat connected to an ITC 503 temperature controller. Microwave power was 0.5 mW, modulation frequency was 100 KHz and the modulation amplitude was 5 G. EPR spectra were collected for the CYP144A1-FLV and CYP144A1-TRV proteins in the ligand-free state (200 μM) and at the same protein concentration following the addition of the azole inhibitor drug econazole (400 μM).
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8

Continuous Wave EPR Analysis of OleT_JE P450s

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Continuous wave X-band EPR spectra for the OleTJE WT and mutant P450s were obtained at 10 K using a Bruker ELEXSYS E500 EPR spectrometer with an ER 4122SHQ Super High Q cavity. Temperature was controlled with an ESR900 cryostat (Oxford Instruments, Abingdon, UK). EPR spectra were collected for WT and OleTJE mutants at concentrations of 100–200 μm for ligand-free, arachidic acid-bound, and imidazole-bound forms. Arachidic acid was added to dilute OleTJE protein until the UV-visible spectrum showed no further optical change toward high spin. The enzyme was then concentrated to an appropriate concentration (200 μm for WT, H85Q, and F79A OleTJE; 150 μm for R245L OleTJE; and 100 μm for the F79W, F79Y, and R245E mutants) (the latter in its substrate-free form), taking into consideration that some of the mutants are prone to precipitation at high concentrations) using a Vivaspin (30,000 molecular weight cutoff).
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9

CYP3A4 and CYP3A5 EPR Spectroscopy

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A continuous-wave X-band EPR spectrum was collected for both CYP3A4 and
CYP3A5. Spectra were obtained at 10 K by using a Bruker ELEXSYS E500 EPR
spectrometer equipped with an ER4122SHQ Super High Q cavity. An Oxford
Instruments ESR900 cryostat connected to an ITC503 was used to control the
temperature. The microwave power was set to 0.5 mW, with the frequency and
modulation amplitude set to 10 GHz and 5 G, respectively. Spectra were collected
for both CYPs in the ligand-free state (200 μM) and with the addition of
exogenous compounds (400 μM).
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10

Synthesis and Characterization of Boron Compounds

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All reactions were performed under an atmosphere of argon or nitrogen using standard Schlenk or dry box techniques; solvents were dried over Na metal, K metal or CaH2. Reagents were of analytical grade, obtained from commercial suppliers and used without further purification. 1H, 11B, 13C and 19F NMR spectra were obtained with a Bruker AVIII 400 MHz BBFO1 spectrometer at 298 K unless otherwise stated. NMR multiplicities are abbreviated as follows: s=singlet, d=doublet, t=triplet, m=multiplet and br=broad signal. Coupling constants J are given in Hz. Most of signals for the quaternary carbon atoms bonding to boron atom could not be detected, presumably due to coupling with the B atom. Electrospray ionization (ESI) mass spectra were obtained at the Mass Spectrometry Laboratory at the Division of Chemistry and Biological Chemistry, Nanyang Technological University. Melting points were measured with an OpticMelt Stanford Research System. Infrared spectra were measured with the Bruker Alpha-FT-IR Spectrometer with an ECO-ATR module. Continuous wave X-band electron paramagnetic resonance (EPR) spectrum was checked using a Bruker ELEXSYS E500 EPR spectrometer.
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