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S cerevisiae invsc1

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S. cerevisiae INVSc1 is a Saccharomyces cerevisiae strain commonly used in molecular biology applications. It is a prototrophic strain, meaning it can grow without the addition of specific nutrients. The strain is genotypically MATα his3Δ1 leu2 trp1-289 ura3-52.

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5 protocols using s cerevisiae invsc1

1

Heterologous expression of ELO and DES

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The candidate genes for ELO and DES were extracted from the Parietichytrium draft genome database by local BLAST using previously known ELO/DES genes as query sequences. The ORFs of the putative ELO (ELO-1, ELO-2, and ELO-3) and DES (DES-1, DES-2, DES-3, DES-4, DES-5, and DES-6) were amplified by PCR using cDNA or genomic DNA of Parietichytrium, and inserted into the MCS of pYES2/CT (Invitrogen). The ω3DES of S. diclina33 (link) and M. alpina50 (link) were obtained from genomic DNA and cDNA, respectively, by PCR, and inserted into pYES2/CT. The expression vectors were introduced into S. cerevisiae INVSc1 (Invitrogen) using the lithium acetate method51 (link). The transformants were selected by plating on synthetic agar plates lacking uracil (SC-ura). S. cerevisiae transformants harboring ELO and DES were cultured in SC-ura medium containing 2% glucose at 25 °C for 1 day, and then cultured for an additional 1 day in SC-ura medium containing 2% galactose and 50 μM fatty acids (substrate), as described in Supplementary Fig. S1a. The cells were collected by centrifugation at 2000 × g for 10 min and lyophilized. The fatty acid profiles were obtained by GC analysis. ELO or DES activity was expressed as follows: activity (%) = product area × 100/(substrate area + product area).
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2

Recombinant GLP-2 Protein Expression in Yeast

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According to the gene sequence of GLP‐2 (NP‐999489), the complete GLP‐2 gene was synthesized by Invitrogen Co (Invitrogen, Shanghai, China). The plasmid pMD19‐GLP‐2 was linearized with KpnI and XhoI. Subsequently, the purified GLP‐2 insert was cloned into multiple cloning sites of the 5,962 bp expression vector pYES2/CT (Invitrogen, CA, USA). The recombinant construct was designated the plasmid of pYES2‐GLP‐2 that contained a yeast GAL1 promoter, a URA3 gene, a versatile multiple cloning site and an ampicillin resistance gene. Thereafter, the plasmid of pYES2‐GLP‐2 was transformed into S. cerevisiae (INVSc1) (Invitrogen, USA) using the chemical method. The transformant was designated GLP2‐SC and expressed the GLP‐2 protein. PCR identification of the GLP2‐SC strain was performed using the primer pair GLP2‐F (5′‐CGGGATCCAAAAAAATGCATGGTGATGGTTCT‐3′) and the reverse primers GLP2‐R (5′‐CCCTCGAGTTATTCAGTAACTTTAGT‐3′). The PCR programme was as follows: 94°C (5 min), followed by 30 cycles of 94°C (45 s), 60°C (30 s) and 72°C (30 s), with a final extension at 72°C (10 min). The original pYES2/CT plasmid (without the GLP‐2 DNA insert) was transformed into S. cerevisiae as a control, which was designated EV‐SC in the current research.
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3

Genetic Manipulation of Thermophilic Microbes

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The strains of Thermoanaerobacter tengcongensis MB4 (provided by Dr. Ma, Institute of microbiology Chinese academy of sciences), Thermus thermophiles HB8 (China Center of Industrial Culture Collection) S. cerevisiae INVSc1 (MATa his3D1 leu2 trp1-289 ura3-52/MATa his3D1 leu2 trp1-289 ura3-52) (Invitrogen, Carlsbad, CA) and Escherichia coli Top10 (Novagen, USA) were genetically manipulated in this study. LB medium (NaCl 10 g/L, yeast extract 5 g/L, tryptone 10 g/L) with 100 mg/L Kanamycin and YPD medium (glucose 20 g/L, tryptone 20 g/L, yeast extract 10 g/L) with 300 mg/L G418 (Invitrogen, Carlsbad, CA) were used to select E. coli and S. cerevisiae transformants respectively. Plasmid pRS42K was purchased from EUROSCARF, Frankfurt, Germany. Restriction enzymes and DNA polymerase were obtained from Fermentas (Burlington, ON). The primers were synthesized by Sangon Biotech (Shanghai, China).
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4

Amyrin Biosynthesis in E. coli and S. cerevisiae

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Escherichia coli DH5α (Invitrogen, Carlsbad, CA, USA) and S. cerevisiae INVSc1 (Invitrogen, USA) were stored and cultivated in our laboratory. α-Amyrin and β-amyrin of 98.5% purity were purchased from Sigma-Aldrich (USA). Other enzymes, unless otherwise specified, were purchased from TAKARA (Dalian, China). Medium and other chemical reagents were bought from authentic companies.
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5

Xylanase Expression in S. cerevisiae

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The strains and plasmids used in this study are shown in Table 1. Escherichia coli DH5α was used as the host for gene cloning assays. S. cerevisiae INVSc1 (Invitrogen, Carlsbad, CA, USA) was selected for use in this study because it shows high level expression of heterologous proteins. Strain INVSc1 was used as the host for xynB expression and to amplify the PKG promoter sequence (850 bp, GenBank accession number: AH001380), the rDNA sequence (2,300 bp, GenBank accession number: BK006945.2), and HAC1 (717 bp, GenBank accession number: NM_001179935). Aspergillus niger strain CICC2462 was used as template to amplify xynB (984 bp, GenBank accession number: FJ986225.1), while plasmids pPic9k and pSH65 were used as templates to amplify the α-factor secretion signal sequence (255 bp, GenBank accession number: KM032189) and CYC1 (254 bp, GenBank accession number: AF298780.1), respectively. S. cerevisiae INVSc1-pYES2-xynB, a single-copy xylanase S. cerevisiae expression strain, was used to express xylanase under galactose induction [14] (link) .
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