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3 protocols using anti ncam

1

Immunofluorescence Staining of Neural Markers

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Control and treated cells were given a washing with chilled 1X PBS followed by fixation with acetone and methanol (1:1) and permeabilization with 0.3% Triton- X100 in 1X PBS. Cells were then blocked with 2% BSA and incubated with primary mouse monoclonal antibody anti-α-Tubulin (1:500), anti-NF-κB (1:500), anti-MAP-2 (1:250), anti-NF200 (1:500), anti-GAP 43 (1:250), anti-HSP70 (1:500), anti-Mortalin (1:500), anti-Bcl-xL (1:200), anti-Cyclin D1(1:250), anti-NCAM (1:250), rabbit monoclonal anti-AP-1(1:250) (all from Sigma-Aldrich) and mouse monoclonal anti-PCNA (1:250), mouse polyclonal anti-PSA-NCAM (1:250) (from Millipore, MA, USA) for 24 h in humid chamber at 4 °C. No permeabilization was carried out for PSA-NCAM immunostaining. After primary antibody incubation, three washings were given with 0.1% PBST and incubated with secondary antibody (goat anti-mouse/ rabbit IgG/ IgM Alexa Fluor 488/543) for 2 h at RT. Cells were stained with nuclear staining dye DAPI (Sigma-Aldrich) for 15 min, washed with 0.1% PBST and mounted with antifading agent Fluoromount (Sigma-Aldrich). Images were captured with Nikon AIR Confocal Laser Scanning Microscope and analyzed with NIS elements analysis software version 4.11.00 (Nikon Co., Tokyo, Japan). Each experiment was carried out in triplicate.
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2

Immunofluorescence Analysis of Kidney Markers

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Immunofluorescent microscopy was performed using 8 μm paraffin sections washed in xylene and re-hydrated in ethanol. Sections were heated in a pressure cooker in 0.1 M sodium citrate buffer (pH 6.0), blocked in a 30% BSA/donkey serum solution, and incubated with primary antibodies overnight at 4 °C. Tissue was incubated with either Alexa Fluor 488/594 goat-anti-mouse or anti-rabbit secondary antibodies (1:500, Invitrogen) and DAPI for 1 h at room temperature, mounted in VectaShield (Vector Labs, CA), and visualized on a Leica DM2500 fluorescent microscope. The primary antibodies that were utilized were: anti-Cited1 (1:200, NeoMarkers, MI), anti-Jagged1 (1:100, Santa Cruz, TX) anti- Notch1 (1:100, Cell Signaling, MA), anti-NCAM (1:200, Sigma, MO), anti-Six2 (1:200, Proteintech, IL), and anti-Frs2α 1: 1:100 (Abcam, MA). DBA and LTL lectins were used at a dilution of 1:200 (Vector Labs, CA).
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3

TUNEL Assay for Apoptosis Analysis in Kidney Development

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Terminal deoxynucleotidyl transferase dUTP nick-end labeling (TUNEL) assays on Fgfr1/2NP−/−, Fgfr1NP−/−Fgfr2LR/LR, Frs2aNP−/−, and control tissue sections (n=3 per genotype) were performed using an ApopTag Plus Fluorescein In Situ Apoptosis Detection kit (Millipore, CA) on paraffin sections (8 μm) following the manufacturer’s instructions. For the TUNEL assays, cortical kidney area was determined by measuring the outline of the developing nephrogenic zone on sagittal sections taken through the kidney midline using Image J software (NIH, MD); apoptosis was quantitated as a percentage of positive cells per nephrogenic zone. To examine cell proliferation, antigen retrieval was performed as outlined previously and tissue was incubated with anti-NCAM (1:200, Sigma, MO) and anti-phosphohistone H3 (1:200, Sigma, MO) overnight at 4 °C. Cells that stained with both phosphohistone H3 (proliferating) and NCAM (nephrogenic compartment) were counted and compared in controls versus Fgfr1NP−/−Fgfr2LR/ LR animals (n=3 per genotype, 2 sections per animal).
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