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3 protocols using mm620l

1

Immunohistochemistry in Lung Tumor Models

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IHC in lung tissues of mice bearing B16F10 tumors was performed as described previously [19 (link)]. Briefly, formalin-fixed paraffin-embedded lung tissue was prepared as described for lung area measurement. We used anti-PCNA antibody (Chemicon-MAB424, 1:2500 dilution). Antibody binding was visualized using AEC (cat#3464, Dako, Glostrup, Denmark). Tissue samples were counter stained with hematoxylin according to standard methods.
IHC in lung tissues of mice bearing LLC1 tumors was performed by the Histopathology Core at the Koch Institute’s Robert A. Swanson Biotechnology Center using a Thermo Scientific LabVision 360 autostainer. Antigen retrieval was performed at 97 °C for 20 min in pH 6 citrate buffer (Abcam #3678). Slides were blocked using Rodent Block M (Biocare Medical #RBM961L). Primary antibodies were Cleaved Caspase 3 (CC3; Cell Signaling Technologies #9664 L, 1:800 dilution) and Ki-67 (Biocare Medical CRM 325B, 1:50 dilution). Secondary detection reagents were Mouse on Mouse HRP (Biocare Medical #MM620L) and Rabbit on Rodent HRP (Biocare Medical #RMR622L). After incubation with DAB Quanto Chromogen Substrate (ThermoScientific #TA-125-QHDX), slides were counterstained and scanned with Leica Aperio AT2.
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2

Quantitative Immunohistochemical Analysis of PDAC

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PDAC tumor microarrays (US Biomax, slide PA242c) were stained with anti-NRP-1 (Abcam ab81321) or anti-alpha v integrin (Abcam ab179475) primaries in accordance with manufacturer instructions, followed by HRP secondaries (BioCare Rabbit-on-Rodent RMR622 and Mouse-on-Mouse MM620L polymers). Slides were digitized using an Aperio slide scanner and quantified using standard DAB and hematoxylin deconvolution functions in ImageJ. Grading was objective and based on linearly spaced bins by DAB to hematoxylin ratio (Grade 1: 0-5; Grade 2: 5-10, Grade 3: 10-15, Grade 4: 15+).
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3

Influenza Virus Infection in Mouse Trachea

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Pups (uninfected, A/X-31-infected, or ba-NA-treated) were euthanized after 2dpi (~5–6 days old). After skin removal, intact heads were fixed in 4% paraformaldehyde (48–72 h, 4°C). Heads were washed in PBS (4°C, 30 min), decalcified (0.12M EDTA [infants], 0.25M [adults]) (4°C, gentle-shaking, 7-days [infants], 21-days [adults]), dehydrated through graded ethanols, and paraffin-embedded (Leica Peloris). 5μm sections were immunostained (Leica BondRX). Briefly, deparaffinized sections were incubated with Rodent Block (RBM961L, Biocare), then with primary reagents (2hr, Cy5-SNL [1:50], biotinylated-MAL-I [1:100], biotinylated-MAL-2 [1:50], biotinylated-ECL [1:200], or anti-Flu-NP (1hr, [1:500]). Lectins were followed by Streptavidin-fluorescein (1:50), whereas anti-Flu was followed by Mouse-on-Mouse-HRP-conjugated polymer (MM620L, Biocare) and Opal620 (FP1495001T, Akoya-Biosciences). Slides were counterstained with DAPI and scanned (Akoya Polaris Vectra). Images were prepared with OMERO.figure v4.4 (OME team). IF was measured using ImageJ (v.1.53e) following color unmixing. Mean-gray-value were obtained from 3–5 random positions along the epithelial surface of each image of >2 representative tissues. Background fluorescence was measured using the same selection and subtracted from the signal. Fold-change over the average Adult value were calculated and adjusted for head size.
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