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Neg772002mc

Manufactured by PerkinElmer
Sourced in United States

The NEG772002MC is a laboratory equipment product from PerkinElmer. It is a core instrument designed for analytical applications, but a detailed description cannot be provided while maintaining an unbiased and factual approach.

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9 protocols using neg772002mc

1

Radiolabeling of Organoid Cells

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A total of 10,000 cells was plated in Matrigel (NIH) and immersed in organoid media (see organoid culture). Cells were treated with 20 mCi [35S]-methionine (Perkin Elmer, NEG772002MC) for 1 hour at 37°C. Cells were collected and subjected to Western blot analysis. Radioactivity was detected using x-ray film.
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2

Quantifying Protein Synthesis in Organoids

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Organoids were analyzed during optimal growth phase, 3days after splitting, and 6hours after a media change. 35S-methionine (Perkin Elmer NEG772002MC) was spiked at 30μCi/mL for 30minutes prior to harvesting and lysed using the western blotting buffer. Protein was precipitated in 12.5% (w/v) trichloroacetic acid onto glass microfiber paper (Whatmann 1827-024) using a vacuum manifold and washed with 70% ethanol and acetone. Scintillation was read on a Wallac MicroBeta TriLux 1450 counter using Ecoscint (SLS Ltd LS271) and normalized to total protein content determined by the BCA assay. Protein synthesis rate was expressed as scintillation over protein content (CPM / μg/mL protein) relative to a control sample set to 1.
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3

Pulse Labeling of Newly Translated Proteins

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For the purpose of pulse labeling of newly translated proteins, 50 isolated islets were incubated in complete RPMI media without cysteine and methionine (MP Biomedicals, #SKU 091646454) for 1 h. Subsequently media was supplemented with 250 μCi of [35S]-cysteine/methionine mixture (PerkinElmer, NEG772002MC) and islets were incubated under normal conditions for 30 min. Islets were then lysed and proteins separated by SDS-gel electrophoresis as described above. Gels were fixed for 30 min in 50% (v/v) ethanol in water with 10% (v/v) acetic acid, dried in gel dryer (Bio-Rad model 583) and then exposed to storage phosphor screen (GE Healthcare) overnight. Screens were imaged and digitized using Typhoon FLA 9000 biomolecular imager (GE Healthcare). Protein bands intensity was quantified with Adobe Photoshop software version 7.
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4

Metabolic Labeling of MARK2 Overexpressing Cells

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Stable MEF cell lines overexpressing MARK2WT or MARK2T595A were plated onto 6-well plates (2 × 105 cells per well) overnight. For puromycin labeling, cells were treated with 10 ug/ml puromycin in culture medium for 10 min and then washed 3 times with 1 X PBS and lysed with RIPA buffer as described above. The cell lysate was analyzed by immunoblotting against puromycin. For 35S labeling, cells were incubated with methionine- and cysteine-free DMEM supplemented with 10% FBS (MilliporeSigma F0392) for 1 h. A total of 200 μCi of [35S]-methionine and [35S]-cysteine (PerkinElmer NEG772002MC, USA) was then added to each dish to metabolically label the cells for 1 h. After radiolabeling, the cells were washed 3 times with 1 X PBS and lysed with RIPA buffer as described above. A total of 20 ng of cell lysate was added into 4 ml of liquid scintillation cocktail (MP Biomedicals 01882475-CF, USA), and the radioactivity was detected using LS6500 Liquid Scintillation Counter (Beckman Coulter, USA).
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5

Quantifying Lipoprotein Secretion in Mice

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After an overnight fast, mice were given an intraperitoneal injection of 200 µCi of [35S] methionine/cysteine protein labeling mix (NEG772002MC, Perkin Elmer) combined with 1,000 mg/kg pluronic F127 poloxamer-407 (BASF, P2443, Sigma-Aldrich) to inhibit lipoprotein clearance from plasma as previously described58 (link). Triglyceride secretion was calculated using plasma collected at 2 h post-injection. Total plasma apoB100 and apoB48 secretion was determined by taking 2 µl of plasma from the 2 h time point and separating the proteins by SDS-PAGE gel electrophoresis followed by densitometric quantification using ImageJ. Plasma from Apobec1−/− mice (which express only apo B100) was used as control to identify apoB100 and apoB48 bands59 (link),60 (link).
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6

ARID1A-Dependent Protein Synthesis Assay

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Cells were plated at a density of 10,000 cells per 50 μL EHS (NIH) and cultured with organoid media (see organoid culture). Cells were treated with 0.05 mCi/mL [35S]-methionine (Perkin Elmer, NEG772002MC) at 37°C for 1 hour. Total cell lysates were prepared and subjected to immunoblot analysis. X-ray film was used to capture the radioactive signal. To check de novo protein synthesis in ARID1A re-expressing organoids, cells were treated with Doxycycline (0.1 μg/mL) for 48 h before performing [35S]-methionine labeling assay.
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7

ARID1A-Dependent Protein Synthesis Assay

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Cells were plated at a density of 10,000 cells per 50 μL EHS (NIH) and cultured with organoid media (see organoid culture). Cells were treated with 0.05 mCi/mL [35S]-methionine (Perkin Elmer, NEG772002MC) at 37°C for 1 hour. Total cell lysates were prepared and subjected to immunoblot analysis. X-ray film was used to capture the radioactive signal. To check de novo protein synthesis in ARID1A re-expressing organoids, cells were treated with Doxycycline (0.1 μg/mL) for 48 h before performing [35S]-methionine labeling assay.
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8

Measuring Protein Synthesis in Organoids

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Organoids were replenished with medium 6 hr prior to analysis while in the optimal growth phase post-splitting. Technical triplicates were used from organoids from three different animals per experiments. 35S-methionine (Perkin Elmer #NEG772002MC) was used at 30 µCi/ml for 30 min. Samples were lysed using the same buffer described for Western blotting. Protein was precipitated in 12.5% (wt/vol) trichloroacetic acid onto glass microfiber paper (Whatmann #1827-024) by use of a vacuum manifold. Precipitates were washed with 70% ethanol and acetone. Scintillation was read on a Wallac MicroBeta TriLux 1450 scintillation counter using Ecoscint scintillation fluid (SLS Ltd #LS271) from these microfiber papers. In parallel the total protein content was determined by BCA assay using unprecipitated sample. Protein synthesis rate was expressed as the scintillation normalised to the total protein content (CPM/µg/ml protein), which was then changed to a relative value compared to relevant controls for each experiment.
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9

Pulse Labeling of Nascent Proteins

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For pulse labeling of newly translated proteins MIN6 cells were incubated in complete DMEM media but without cysteine and methionine (MP Biomedicals, #SKU 091646454) for 1hr.
Subsequently media was supplemented with 250 µCi of [ 35 S]-cysteine/methionine mixture (PerkinElmer, NEG772002MC) and cells incubated under normal conditions for 30 min. Cells were then lysed and proteins separated by SDS-gel electrophoresis as described above. Gels were fixed for 30 min in 50% (v/v) ethanol in water with 10% (v/v) acetic acid, dried in gel dryer (Bio-Rad model 583) and then exposed to storage phosphor screen (GE Healthcare) overnight.
Screens were imaged and digitized using Typhoon FLA 9000 biomolecular imager (GE Healthcare). Protein bands intensities were quantified with Adobe Photoshop software.
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