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Anti myod antibody

Manufactured by Santa Cruz Biotechnology
Sourced in United States

The Anti-MyoD antibody is a laboratory reagent used to detect the presence and abundance of the MyoD protein in biological samples. MyoD is a key transcription factor involved in the regulation of muscle cell differentiation. The antibody can be used in various analytical techniques, such as Western blotting, immunohistochemistry, and flow cytometry, to study the expression and localization of MyoD in different cell types and tissues.

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9 protocols using anti myod antibody

1

ChIP-qPCR Analysis of Epigenetic Marks

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ChIP assays were carried out as previously described using 150 µg of chromatin for EZH2 and MyoD, and 50 µg of chromatin for modified histones. In brief, chromatins were immunoprecipitated with anti-MyoD antibody ([sc-760] Santa Cruz Biotechnology), anti-EZH2 antibody (39901, Active Motif), anti trimethyl-histone H3K27 (07-449, Millipore), anti trimethyl-histone H3K4 (07-473, Millipore), normal rabbit (Millipore, 12-370) or normal mouse IgG (Millipore, 12-371). qPCR analysis was performed in triplicate for each of three independent experiments, using 5 ng of DNA, Go Taq qPCR Master Mix (Promega) and the following primer pairs:p57 prom

F: 5′5′ACTGAGAGC-AAGCGAACAGG-3′

R: 5′ACCTGGCTGATTGGTGATGG-3′;

Maternal p57i

F: 5′-CAGATCTGACCTCAGACCCA-3′

R: 5′-CCTGTTCCTCGCCGTCCC-3′;

Paternal p57i

F: 5′CAGATCTGACCTCAGACCCG-3′

R: 5′-GACCTGTTCCTCGCCATCCT-3′;

β-globin prom

F: 5′-GAAGCCTGATTCCGTAGAGC-3′

R: 5′-CAACTGATCCTACCTCACCTTATATGC-3′;

β-Actin prom

F: 5′-GTGACATCCACACCCAGAGG-3′

R: 5′-GAATAGCCTCCGCCCTTG-3′;

Amylase prom

F: 5′-TCAGATGGGAGGACTGCTATTGT-3′

R: 5′-GCTCACATTCCTTGGCAATATCA-3′;

Albumin prom

F: 5′-AATCGTCTTTGAGGCACCAG-3′

R: 5′-GCTCAATCTTCCCAAACAGG-3′;

Timm prom

F: 5′-ACGGATGTGGCCCTTCTGGCT-3′

R: 5′-CCGCTGCGAAACGCCCACAA-3′;

p57i

F: 5′-AACTTCCAGCAGGATGTGCC-3′

R: 5′-CATCCACTGCAGACGACCAG-3′

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2

Pax7 and MyoD Immunostaining Protocol

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For Pax7 immunostaining, fresh sections were fixed in 4% paraformaldehyde for 20 min, permeabilized with methanol (-20°C) for 6 min, and blocked first with a solution containing 4% bovine serum albumen (BSA; Jackson) in PBS and then with goat anti-mouse AffiniPure Fab fragment (1:100; Jackson) after antigen retrieval with 100 mmol/L sodium citrate. The sections were then incubated overnight at 4°C with an anti-Pax7 antibody (1:20; Developmental Studies Hybridoma Bank). After washing with PBS, Pax7 signals were visualized by incubating with biotin-conjugated goat anti-mouse IgG1 (1:1000; Jackson) and Cy3-conjugated streptavidin (Jackson; 1:2500). Nuclei were stained with 4’,6-diamidino-2-phenylindole (DAPI; Invitrogen). For MyoD immunostaining, the fresh sections were fixed in 4% paraformaldehyde for 20 min, permeabilized with 0.2% Triton X-100/PBS (PBST) for 10 min, and blocked by incubating with 5% BSA/6% goat serum/0.2% PBST at room temperature for 2 h. Immunostaining with anti-MyoD antibody (1:50; Santa Cruz) was performed by overnight incubation at 4°C. After washing, immunoreactive proteins were visualized by incubating with fluorescein isothiocyanate (FITC)-conjugated goat anti-rabbit IgG. Nuclei were stained with DAPI (Roche). The Pax7+ and MyoD+ cells in the sections (n = 10) were counted.
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3

Quantifying Sclerostin and MyoD in C2C12 and C57 Cells

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C2C12 and C57 cells grown on glass coverslips were fixed in 4% paraformaldehyde at 4 °C for 20 min, blocked in 4% (w/v) bovine serum albumin (BSA) PBS and incubated with primary anti-sclerostin (ab63097, Abcam, Cambridge, United Kingdom) anti-MyoD antibody (Santa Cruz Biotechnology, Dallas, USA) overnight at 4 °C. Coverslips were next washed with PBS and incubated with fluorescence-labeled secondary antibodies (Thermo Scientific, Waltham, MA, USA) for 1 h at room temperature. Slides were mounted with a 10% DABCO (1,4-diazabicyclo[2.2.2]octane) solution and were observed using a Nikon A1 confocal laser scanning microscope. The confocal serial sections were processed with ImageJ software to obtain three-dimensional projections and image rendering was performed using Adobe Photoshop CS 8.0 software (Adobe Systems, San Jose, CA, USA). All the images shown in this paper are representative of at least 3 independent experiments carried out under the same conditions.
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4

Immunostaining of MyoD in Mice Muscle

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MyoD expression for proliferating myosatellite cells was examined using tissues of the gastrocnemius muscles harvested from control and ob/ob mice 7 days after ligation of the femoral artery. After paraffin was removed, endogenous peroxidase was inactivated by 0.3% hydrogen peroxide in methanol for 30 min. The sections were incubated with rabbit polyclonal anti-MyoD antibody (Santa Cruz Biotechnology, Santa Cruz, CA, United States) overnight at room temperature. Between the incubation steps, sections were dip immersion washed (3 min × 5-min wash) in TBS to eliminate excesses of non-bound antibody or reagent. The antibody was diluted in 1% BSA/TBS to suppress non-specific reactions. Then, the sections were incubated with the reagent which anti-rabbit immunoglobulin conjugate HRP and anti-mouse immunoglobulin conjugate HRP mixed in by employing the universal immuno-enzyme polymer method (Histofine® Simple Stain MAX-PO; Nichirei, Tokyo, Japan). The reaction products were visualized in 0.15 mg/ml DAB solution containing 0.003% hydrogen peroxide. After washing in water, the counter was stained by hematoxylin.
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5

Muscle Protein Expression Analysis

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Muscular tissues obtained from control mice and post-operative mice at day 3 were lysed in hypotonic lysis buffer (25 mM Tris, 1% NP-40, 150 mM NaCl, 1.5 mM EGTA) supplemented with protease and phosphatase inhibitor mix (Roche Diagnostics, Basel, Switzerland). Protein concentration was quantified using the BCA Protein Assay Kit (Thermo Scientific, Rockford, IL, USA) and standardized by dilution with hypotonic buffer. Each sample was mixed with sample buffer, electrophoresed on a 7.5–15% polyacrylamide gradient gel (Biocraft, Tokyo, Japan) and transblotted electrically onto the blotting membrane (GE Healthcare, Buckinghamshire, UK). Membranes were incubated overnight at 4°C with the following antibodies in Can Get Signal Solution 1 (Toyobo): anti-MyoD antibody (1:200 dilution; Santa Cruz Biotechnology), anti-Myogenin antibody (1:1000 dilution; Abnova, Taipei, Taiwan), anti-Pax 7 antibody (1:1000 dilution; abcam), and anti-mouse α-tubulin antibody (1:5000 dilution; Sigma-Aldrich, St. Louis, MO, USA). Horseradish peroxidase (HRP)-conjugated donkey anti-rabbit IgG antibody (1:2000 dilution; GE Healthcare Bio-Sciences, Piscataway, NJ, USA) was used as the secondary antibody and the signals were visualized with the ECL Plus western blotting detection system reagent (GE Healthcare) using a Chemilumino Analyzer LAS-3000 mini (FUJI FILM, Tokyo, Japan).
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6

MyoD Expression Analysis in Limb Ischemia

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Expression of MyoD was analyzed by western blotting. The muscle tissue harvested from gastrocnemius 7 days after artery ligation (n = 5 in each group) was frozen in liquid nitrogen, homogenized using a Cryopress (Microtech, Chiba, Japan) and stirred in the RIPA buffer (10 mM Tris-HCl (PH 7.4), 1% NP40, 0.1% sodium deoxycholate, 0.1% SDS, 0.15M NaCl, 1 mM EDTA, 10 μg/ml aprotinin) for 1 h. The supernatants were separated by SDS-PAGE, transferred to nitrocellulose membranes, and immunoblotted with primary antibodies. The primary antibody was a rabbit polyclonal anti-MyoD antibody (Santa Cruz Biotechnology, Santa Cruz, CA, United States). The bands were visualized using the ECL Western blotting detection system (GE Healthcare Unided Kingdom, Ltd., Buckinghamshire, United Kingdom) and were detected by a LAS-4000 imager (Fujifilm, Tokyo, Japan). Subsequently, the bands were analyzed by ImageJ software (National Institutes of Health, Bethesda, MD, United Stated) to quantify the expression of MyoD. MyoD levels were normalized to beta actin levels for the same animal to control for the possibility of unequal protein loading, and results were calculated as a ratio in relation to the control group.
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7

ChIP-seq Profiling of MyoD Binding

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An Active Motif's ChIP-IT Express Kit was used for the ChIP experiment according to the manufacturer's instructions. Briefly, cells were crosslinked with 1% formaldehyde for 10 min at room temperature and lysed in SDS lysis buffer. Samples were then sonicated or enzymatically digested to obtain DNA fragments with an average length of 200-800 bp. Supernatant containing DNA-protein complexes was used for immunoprecipitations using an anti-MyoD antibody (Santa Cruz, sc-760) or a normal rabbit IgG control. Immunoprecipitated chromatin was collected using protein G magnet beads, and, after washing and elution, reverse crosslinking was carried out with 0.2 M NaCl at 65 C overnight. The chromatin was then digested by 20 mg of Proteinase K (Invitrogen) for 1 hr at 45 C and isolated by phenol chloroform extraction. PCR reactions were performed using the SYBR Green PCR Master Mix (Applied Biosystems) and primers against LncMyoD promoter regions. Data were normalized to the input signal and IgG values.
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8

Immunohistochemical Analysis of Inflammatory Markers and Muscle Regeneration

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Formalin-fixed, paraffin-embedded, 5-μm-thick tissue sections were subjected to automated immunohistochemistry with a Ventana BenchMark XT immunostainer (Ventana Medical Systems, Oro Valley, AZ, USA). The sections were incubated with a mouse anti-TNF-α antibody (Abcam, Cambridge, UK) diluted 1:10,000 and a mouse anti-IL-1β antibody (Santa Cruz Biotechnology, Dallas, TX, USA) diluted 1:5000 for 32 min and then visualized with an Optiview DAB IHC Detection Kit (Ventana Medical Systems, Oro Valley, AZ, USA) following amplification of the signal. The specimens were counterstained with a Ventana kit (hematoxylin for 4 min and Bluing Reagent for 4 min).
To detect regenerating muscle fibers, fluorescence immunohistochemistry was performed with anti-laminin (Novus Biologicals, CO, USA) and anti-MyoD antibodies (Santa Cruz Biotechnology, Dallas, TX, USA). Each specimen was also stained with DAPI to visualize the nuclei of mitotic cells. Immunohistochemistry was carried out using typical methods.
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9

Immunohistochemical Analysis of Muscle Regeneration

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Formalin-xed, para n-embedded, 5-μm-thick tissue sections were subjected to automated immunohistochemistry with a Ventana BenchMark XT immunostainer (Ventana Medical Systems, AZ, USA). The sections were incubated with a mouse anti-TNF-α antibody (Abcam, Cambridge, UK) diluted 1:10000 and a mouse anti-IL-1β antibody (Santa Cruz Biotechnology, TX, USA) diluted 1:5000 for 32 min and then visualized with an Optiview DAB IHC Detection Kit (Ventana Medical Systems, AZ, USA ) following ampli cation of the signal. The specimens were counterstained with a Ventana kit (hematoxylin for 4 min and Bluing Reagent for 4 min).
To detect regenerating muscle bers, uorescence immunohistochemistry was performed with antilaminin (Novus Biologicals, CO, USA) and anti-MyoD antibodies (Santa Cruz Biotechnology, TX, USA). Each specimen was also stained with DAPI to visualize the nuclei of mitotic cells. Immunohistochemistry was carried out using typical methods.
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