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5 protocols using z yvad fmk

1

Hypoxia and CO2 Modulation in Macrophages

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Monocytes are reportedly the main cellular source of proinflammatory cytokines.19 (link),20 (link) Thus, the THP-1 human monocytic cell line was used in the present study; these cells were purchased form American Type Culture Collection (Manassas, VA, USA). THP-1 cells were cultured with RPMI-1640 medium supplemented with 10% fetal bovine serum (Invitrogen; cat. no. 16140071) and 1% penicillin-streptomycin solution at 37°C in a 5% CO2 incubator. THP-1 monocytes were cultured in six-well plates (1 × 106 cells/mL, 2 mL) for 48 hours in the presence of 100 nM phorbol 12-myristate 13-acetate,21 (link) which stimulated differentiation into macrophages. Macrophages were randomly divided into six groups: control (exposed to 5% CO2 + 20% O2), hypoxia + 5% CO2 (exposed to 5% CO2 + 0.2% O2), hypoxia + 7% CO2 (exposed to 7% CO2 + 0.2% O2), hypoxia + 10% CO2 (exposed to 10% CO2 + 0.2% O2), hypoxia + 10% CO2 + N-acetyl-L-cysteine (NAC), and hypoxia + 10% CO2 + Z-YVAD-FMK. Cells in the hypoxia + 10% CO2 + NAC and hypoxia + 10% CO2 + Z-YVAD-FMK groups were respectively treated with an ROS scavenger, 25 mM NAC22 (link)–24 (link, link) (MedChemExpress, Monmouth, NJ, USA; cat. no. HY-B0215), and a pan-caspase inhibitor, 10 μM Z-YVAD-FMK25 (link),26 (link) (ApexBio, Boston, MA, USA; cat. no. A8955), for 30 minutes before exposure to 10% CO2 + 0.2% O2.
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2

Murine Macrophage Immune Activation

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RPMI 1640 medium was obtained from Lonza, FBS from Atlanta Biologicals, glutamine and penicillin-streptomycin from Gibco and recombinant murine GM-CSF from PeproTech. Diphenyleneiodonium, N-acetyl cysteine, Glybenclamide, Poly (dAdT), Red Blood Cell Lysing Buffer, and 2-mercaptoethanol were from Sigma, LPS was from Invivogen, Calcein AM from Invitrogen, GeneJuice from Novagen and the Caspase-1 inhibitor ZYVAD-FMK from APEx Bio and Nigericin was from Thermo Scientific, IFN-I receptor subunit 1 (IFNAR1) blocking antibody (MAR1–5A3) and IgG isotype control antibody (MOPC-21) from BioXCell. S. mansoni genomic DNA was from the Schistosomiasis Resource Center (NIH).
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3

Murine Macrophage Activation Assay

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RPMI 1640 medium was obtained from Lonza, fetal bovine serum (FBS) from Atlanta Biologicals, glutamine and penicillin-streptomycin from Gibco, and recombinant murine granulocyte-macrophage colony-stimulating factor (GM-CSF) from PeproTech. The Syk inhibitor Piceatannol was obtained from Tocris Biosciences, the Malt1 inhibitor Z-VRPR-FMK was from Santa Cruz, the caspase-1 inhibitor ZYVAD-FMK was from APEx Bio, and the Raf-1 inhibitor GW5074 was from Sigma. Nigericin, Red Blood Cell Lysing Buffer, and 2-mercaptoethanol were from Sigma, and curdlan, LPS, and calcein AM were from Invivogen.
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4

Microglial Cell Responses to Hypoxia and CO2 Modulation

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BV-2 microglial cells (CHI Scientific, Wuxi, China; cat. no. 7-1502) were cultured in Dulbecco’s Modified Eagle Medium (DMEM) high glucose (Gibco/Thermo Fisher, Grand Island, NY, USA; cat. no. 8117046) supplemented with 10% fetal bovine serum (FBS) (Capricorn Scientific GmbH, Ebsdorfergrund, Germany; cat. no. FBS-52A) at 37 °C in a humidified incubator with 5% CO2/95% air. The cells were divided into five groups: control group, exposed to 20% O2 + 5% CO2; high concentration of carbon dioxide group (HC group), exposed to 20% O2 + 15% CO2; hypoxia group, exposed to 0.2% O2 + 5% CO2; hypoxia + HC group, exposed to 0.2% O2 + 15% CO2; hypoxia + HC + Z-YVAD-FMK group, treated with Z-YVAD-FMK (10 μM) [24 (link)] (ApexBio, Boston, MA, USA; cat. no. A8955) for 30 min before being exposed to 0.2% O2 + 15% CO2. The treated cells from different groups were incubated in an air-tight chamber, in which the O2 and CO2 concentrations were controlled by a Carbon Dioxide and Oxygen Controller (ProOx C21, Biospherix, Lacona, NY, USA). A Blood Gas/Electrolyte Analyzer (Model 5700, IL, San Diego, CA, USA) was used to measure PO2, PCO2, and pH of supernatants.
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5

Zebrafish Cell Line Infection and Inhibition

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Mycoplasma free-ZF4 cells (ATCC CRL-2050), established from 1-day-old zebrafish embryos, were grown at 28 °C in Dulbecco’s modified Eagle’s medium (DMEM)/F12 (Gibco) medium supplemented with 10% fetal bovine serum (FBS; Gibco) in an atmosphere containing 5% (v/v) CO2. These cells were infected by replacing the culture medium with Opti-MEM (Gibco) and adding E. piscicida at a multiplicity of infection (MOI) of 50. For CTB (List Biological Laboratories) treatment, Pam3CSK4 (InvivoGen) primed cells were stimulated with 20 mg/mL CTB plus 1 mg/mL ultrapure LPS (E. coli O111:B4, InvivoGen)22 (link),41 (link). For inhibitor assays, the cells were pretreated with Z-WEHD-FMK (ApexBio), Z-YVAD-FMK (ApexBio), Ac-LEVD-CHO (Sigma), Z-VAD-FMK (Beyotime Biotechnology), Ac-DEVD-CHO (Beyotime Biotechnology), or 10 mM glycine (Sigma), respectively, for 30 min before being exposed to E. piscicida at an MOI of 50.
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