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Intercalation solution

Manufactured by Standard BioTools

The Intercalation solution is a laboratory reagent designed for the intercalation of DNA. It serves as a core function to enable the separation and visualization of DNA molecules during gel electrophoresis procedures.

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2 protocols using intercalation solution

1

Multiplexed CyTOF Profiling of CAR T Cells

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Purified CD22-CAR;PRODH2 and CD22-CAR;PRODH2(Stop) T cells (without cancer stimulation) were collected and washed with PBS, resuspended cell to 1e7 / mL in PBS and Cell-ID Cisplatin (Fluidigm) was added to a final concentration of 5 μM. Cells were incubated at room temperature for 5 min, then washed with Maxpar Cell Staining Buffer (Fluidigm). 1.5e6 CAR T cells per replicate were used for staining, each group has three replicates. Cells were stained with surface marker antibody cocktail first, then fixed and permeabilized. Second round staining was performed using cytoplasmic / secreted antibody cocktail. Finally, cells were incubated in intercalation solution (Fluidigm) in a final concentration of 125 nM, then incubated overnight at 4 °C. Before running on a CyTOF machine, cell concentrations were adjusted to 5–7e5/ mL with water. All data were collected on a CyTOF Helios instrument (Fluidigm). All surface and cytoplasmic / secreted antibodies were purchased from Fluidigm or Yale CyTOF core.
A list of CyTOF antibodies used in this study can be found in KRT.
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2

Multiparametric Flow Cytometry Assay for PBMCs

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PBMCs were suspended in flow cytometry (FACS) Buffer (Sigma, USA) with 250 nM monoisotopic cisplatin reagents Cell-ID Cisplatin-194Pt (Fluidigm, San Francisco, CA) for viability staining. Fc-receptor blocking solution (BioLegend, San Diego, CA) was used for cell blocking, followed by incubation with an extracellular antibody cocktail for 30 minutes on ice. Then the cells were fixed and permeabilized using intercalation solution (Fluidigm) and stained with the intracellular markers for 30 minutes on ice. As described previously, the mass-tag cell barcoded (MCB) were used to eliminate variability between antibody staining samples and instrument sensitivity (12 (link)). Finally, the cells were resuspended in deionized water with 20% (V/V) EQ beads (Fluidigm) and filtered into cell strainer cap tubes.
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