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3 protocols using anti trif

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Neuraminidase-Mediated Immune Modulation

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Bovine serum albumin (BSA), anti-phosphotyrosine (cat no-4G10), anti-phospho-IRF3 (cat no-SAB4504031) and anti-IRF3 (cat no-SAB3500280) antibodies were from Sigma (St.Louis, MO). Neuraminidase from Arthrobacter ureafacians (10269611001) was obtained from Roche (Germany). RNeasy Mini Kit was from Qiagen (Limburg, Netherlands); Reverse Transcriptase Kit was from Promega (USA). DyNAmo Color Flash SYBR Green qPCR kit was procured from Thermo Scientific (Rockford, IL). Antibodies-Neu1 (cat no PA5-42552) and Triad3A (cat no-PA5-20079) was from Thermo Fisher Scientific (Rockford, USA). Anti-TLR4 (cat no- MTS510), anti-siglec-E (cat no-377477) antibodies and siglec-E si RNA (cat no-sc-153462) was from Santa Cruz Biotechnology. Anti-Myd88 (cat no-NBP2-27369) and anti-TRIF (cat no-NB120-13810SS) was from Novus Biologicals (Littleton, USA). The cytokine ELISA kits (IFN-β, TNF-α and IL-6) were from Elabscience and from BD-Biosciences (IFN-γ and IL-12). Neu1 plasmid DNA was obtained from Origene (MR226903). All other antibodies were from Cell signaling Technologies (Danvers, MA) unless indicated otherwise. Giemsa stain was obtained from Himedia (India).
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Quantitative Analysis of Innate Immune Signaling

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Mφ transfected with either Mal siRNA or control siRNA were washed with PBS and disrupted with lysis buffer (50 mmol L−1 Tris-HCl, 250 mmol L−1 NaCl, 5 mmol L−1 EDTA, 1 mmol L−1 dithiothreitol, 5% glycerol, 0.2% Nonidet P-40 at pH 8) containing a protease inhibitor cocktail (Roche Applied Science). Protein concentrations were determined using the DC protein assay (Bio-Rad, Hercules, CA). Equal amounts of whole cell lysates (50–100 μg) were loaded in each lane for separation by SDS-PAGE and transferred to a nitrocellulose membrane. After blocking in Tris-buffered saline containing Tween 20 (0.1%) (T-TBS) and milk (5%) at room temperature for 2 h, the membrane was then incubated at 4°C overnight with primary antibodies. After washing with T-TBS, the membrane was incubated at room temperature for 1 h with HRP-conjugated anti-rabbit IgG secondary antibody (Cell Signaling Technology, Danvers, MA). The primary anti-Mal (Abcam, Cambridge, UK), anti-MyD88 (Cell Signaling Technology), anti-TRIF (Novus Biologicals, Littleton, CO), anti-TLR-4 (Novus Biologicals) and anti-β-actin (Sigma- Aldrich) antibodies were diluted and used as described in the manufacturer’s instructions. The density of each band was quantified by densitometric analysis with Image J software (Image Processing and Analysis in Java) from the NIH (https://imagej.nih.gov/ij/).
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3

Molecular Mechanisms of Neuropathic Pain

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Ipsilateral dorsal lumbar (L4–L6) spinal cord and dorsal root ganglia (DRG) were collected immediately after decapitation on 2nd, 7th, and 14th days after CCI. Tissue was stored at −80°C until processing, which was described previously [28 (link)]. Blots were incubated overnight at 4°C with primary antibodies: anti-IBA-1 (rabbit anti-rat, 1 : 1000, Proteintech, Chicago IL, USA), anti-TLR2 (rabbit anti-rat, 1 : 2000, Novus Biological, Littleton CO, USA), anti-TLR4 (rabbit anti-rat, 1 : 1000, Proteintech, Chicago IL, USA), anti-MyD88 (rabbit anti-rat, 1 : 1000, Abcam, Cambridge, UK), and anti-TRIF (rabbit anti-rat, 1 : 500, Novus Biologicals, Littleton CO, USA) and for 1 h at RT with a corresponding secondary polyclonal HRP antibody (goat anti-rabbit IgG, 1 : 5000, Bio-Rad, Hercules, CA, USA). Both primary and secondary antibodies were diluted in solutions from SignalBoost Immunoreaction Enhancer Kit (Merck Millipore, Darmstadt, Germany). Immunocomplexes were detected using Clarity Western ECL Substrate (BioRad, Hercules, CA, USA) and visualized using a Fujifilm LAS-4000 fluoroimager system. The blots were stripped using Restore Western Blot Stripping Buffer (ThermoScientific, Waltham, MA, USA) for 15 minutes at RT and reprobed with an antibody against GAPDH (mouse anti-rabbit, 1 : 5000, Merck Millipore, Darmstadt, Germany) as a loading control.
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