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8 protocols using anti cd8 apc

1

Peripheral Lymphocyte Immunotyping Protocol

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We quantified the CD 19 + lymphocytes (B cells), T CD3 + lymphocytes, T CD3 + CD4 + lymphocytes, T CD3 + CD8 + lymphocytes and CD56 + CD3- cells (NK cells). A polychromatic flow cytometry tube was used for peripheral lymphocyte immunotyping developed at the immunology laboratory of the National Medical Genetics Center (Zúñiga Rosales et al., 2020 ). The monoclonal antibodies conjugated with fluorochromes from MACS MiltenyiBiotec (Germany) included anti-CD45 APC-Vio770 (Clone 5B1), anti-CD19 PE-Vio700 (Clone LT19), anti-CD3 FITC (Clone BW264/56), anti-CD4 PerCP-Vio700 (Clone M−T466), anti-CD8 APC (Clone BW135/80), anti-CD56 PE (Clone REA196), (Fig. S1).
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2

Flow Cytometry Analysis of CD3+ T Cells and CD19 CAR Expressing T Cells

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To determine total CD3+ T cells, 100 µl peripheral blood (EDTA) was stained with anti CD45 VioGreen, anti CD3 VioBlue, and 7AAD, according to the manufacturer’s instructions (Miltenyi Biotec). Whole blood was lysed with BD Pharm Lyse™ solution (BD Biosciences, Heidelberg, Germany) and subsequently analyzed on a MACSQuant10 Analyzer (Miltenyi Biotec). Total CD3+ T cell numbers were calculated from WBC counts, determined using standard automated blood cell counters.
CD19 CAR expressing T cells were determined using CD19 CAR detection reagent (Miltenyi Biotec), according to the manufacturer’s instructions. In brief, 1 mL peripheral blood (heparinized) was bulk lysed using BD Pharm Lyse™ solution, washed with FACS buffer (PBS containing 2% FBS), and resuspended in 100 µl FACS buffer. Cells were stained with CD19 CAR detection reagent for 10 min at room temperature, washed with FACS buffer, and stained with anti CD45 VioGreen, anti CD3 VioBlue, anti CD4 PerCPVio700, anti CD8 APC, anti CD19 FITC, and anti-biotin PeVio770 (Miltenyi Biotec) for 10 min at room temperature. After washing with FACS buffer, cells were resuspended in 500 µl FACS buffer and subsequently analyzed on a MACSQuant10 Analyzer. Routinely, at least 125,000 cells were analyzed in the lymphogate to ensure high sensitivity.
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3

Intracellular GZMA Expression in Sepsis

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After 24 h of sepsis induction, WT and GZMA-/- mice were sacrificed. Blood and spleen were collected aseptically. PBLs were isolated from blood as described above and spleen was homogenized in 5 mL of RPMI medium. 2x105 PBLs or splenocytes were stained with anti CD3-FITC, anti CD8-APC, anti NK1.1-APC-Vio770 and anti CD4-VioBlue from Miltenyi Biotec. Subsequently, cells were fixed with paraformaldehyde (PFA) 1%, permeabilised with saponin 1% in PBS and incubated with anti gzmA-PE (eBioscience) or with the corresponding isotype control (IgG2b kappa isotype control PE, eBiosciencie). Finally, intracellular expression of GZMA was analysed by FACS.
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4

Comprehensive Flow Cytometric Immunophenotyping

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PBMCs were isolated and cryopreserved. At the time of analysis, 5 x 105 thawed PBMCs were incubated with the following monoclonal antibodies: anti-CD3 VioBright R720, anti-CD8 APC, anti-CD4 APC-Vio770, anti-CD45RA PE-Vio615, anti-CD57 Vioblue, anti-PD1 ViobrightFITC, anti-CD49d PE770 (Miltenyi Biotech, Germany), anti-CCR7 BV785 (Biolegend, USA) and FVS510 (Fixable Viability Stain 510) (BD Biosciences, USA).
After 10 min on ice in the dark and one wash with PBSA (PBS supplemented with bovine serum albumin), the cells were acquired in an LSRFortessa flow cytometer (BD Biosciences, CA, USA). Dot plots were generated using FlowJo v10.6.2 software (Tree Star, USA).
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5

Antigen-specific T cell activation assay

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Antigen-specific T cell activation by macrophages was determined essentially as described [75 (link)]. In brief, MDMs or TAMs were loaded with 1μg/ml CEFT peptide pool (jpt Peptide Technologies, Berlin, Germany) as recall antigens and incubated with a 5-fold excess of lymphocytes for 18 h in the presence of Brefeldin A (Sigma Aldrich, Steinheim, Germany). Lymphocytes were harvested and stained with anti-CD8-APC (Miltenyi Biotec, Bergisch Gladbach, Germany) and after permeabilization with anti-IFNγ-FITC (eBioscience, Frankfurt, Germany). Flow cytometry (FACS Canto, BD Bioscience, Heidelberg, Germany) data were expressed as IFNγ+/CD8+ cells after subtracting background staining of non-stimulated controls.
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6

Isolation and Flow Cytometric Analysis of Fetal Brain Cells

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Brains from 22- to 26-week-old animals were homogenized using a 5-ml Glass Tissue Grinder (A. Hartenstein). The homogenized solution was mixed with 100 % Percoll solution (GE healthcare) to a final 70 % Percoll solution and layered under a 30 % Percoll solution. After 30 min centrifugation at 500g without brake at RT, the cells were isolated from the 30–70 % layer and washed with PBS. Per staining, 100 000 cells were used. The staining was performed in FACS-PBS (PBS, 2 % FCS, 5 mM EDTA) in the presence of the FcBlocker (Miltenyi Biotec) using the following fluorescently labeled antibodies: anti-CD4-PE, anti-CD8-APC, anti-CD11b-FITC, and anti-CD45-APC (all from Miltenyi Biotec), for 15 min at RT in the dark. Samples were analyzed using a Gallios flow cytometer (Beckman Coulter). Thirty thousand events were recorded. Flow cytometry data were analyzed using the FlowJo 8.5.3 software (FlowJo, LLC). For viability testing, the Fixable Viability Dye eFluor® 780 (eBioscience) was used according to the manufacturer’s instructions. The gating of the living cell population was performed based on the live staining; dead cell populations were excluded. The total cell number was determined utilizing bead measurement (Beckman Coulter CC Size Standard L10), and the absolute cell numbers were calculated according to the manufacturer’s instructions.
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7

Concanavalin A-Stimulated PBMC Assay

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PBMCs were stimulated with 2.5 µg/mL Concanavalin A in the absence or presence of MSCs for 5 days. Then, PBMCs were collected and stained with the following antibodies: Anti-CD3-VioGreen, anti-CD19-PEVio770, anti-CD8-APC (Miltenyi Biotec, Bergisch Gladbach, Germany), or corresponding isotype controls following the manufacturer’s instructions. Data were acquired using the MACSQuant® analyzer (Miltenyi Biotec, Bergisch Gladbach, Germany). Data were analyzed using FlowJoTM v10.6.2 Software (BD Life Sciences, Ashland, OR, USA).
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8

Flow Cytometry for NK Cell Analysis

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Multi-parameter flow cytometry was performed using a lysed-whole-blood technique without isolation of cells on a density gradient, using a commercially available red cell lysing solution, Optilyse B (Beckman Coulter). The cell labelling and membrane fixation/permeabilization procedures were done by standard methods; the cell staining was performed as described in (Babusikova et al. 2008) . We used monoclonal antibodies targeting membrane antigens: anti-CD45-ECD (Beckman Coulter), anti-CD16-FITC (Beckman Coulter), anti-CD11b-PE (Miltenyi Biotec), anti-CD3-FITC (Miltenyi Biotec), anti CD4-PE (Miltenyi Biotec), anti-CD8-APC (Miltenyi Biotec), anti-CD25-Pacific Blue (ExBio Praha), anti-CD19-FITC (Miltenyi Biotec) and anti-CD56-PE (Beckman Coulter), and FACS analysis was performed by FACS Canto II flow cytometer (BD Biosciences, San Jose, CA). The data were analysed using FCS Express 4.0 (De Novo Software). NK cells were identified as CD3-CD56 + cells. To determine the absolute number of NK cells, equal volumes (100 μl) of Flow-Count Fluorospheres (Beckman Coulter, CA, USA) and cells were mixed, and the NK cell concentration was calculated according to the formula: NK cells/μl = (count NK cells × concentration beads)/ (count beads).
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