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Random hexamers primers

Manufactured by Roche
Sourced in Switzerland

Random hexamers primers are short, synthetic DNA sequences consisting of six randomly arranged nucleotides. They are commonly used in molecular biology techniques, such as reverse transcription and random-primed labeling, to initiate the synthesis of complementary DNA (cDNA) from RNA templates.

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6 protocols using random hexamers primers

1

Quantitative Analysis of Aquaporin Gene Expression

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Total RNA was extracted from cultured cells using TRIzol Reagent (Invitrogen), according to the manufacturer’s protocol. The RNA was treated with RNase-free DNase I (Sigma-Aldrich, St. Louis, MO, USA) to avoid contamination with genomic DNA. Extracted RNA was quantified with Nanodrop™ 2000c spectrophotometer. For template cDNA synthesis, 1 µg of total RNA was reverse transcribed in a 20 µL final volume using random hexamers primers (Roche Applied Science, Penzberg, Germany) and 200 units of M-MLV reverse transcriptase (Invitrogen), as previously described [36 (link)].
Real-time PCR reactions were carried out using a CFX96 Real-Time System C1000 (BioRad, Hercules, CA, USA), the TaqMan Universal PCR Master Mix (Applied Biosystems Thermo Fisher Scientific, Waltham, MA, USA), and the following specific TaqMan pre-designed gene expression primers: AQP1 (Hs01028916_m1), AQP3 (Hs01105469_g1), AQP5 (Hs00387048_m1), and ACTB (Hs99999903_m1) (Applied Biosystems, ThermoFisher Scientific, Waltham, MA, USA). The cDNA was amplified at the following conditions: 50 °C for 2 min, 95 °C for 10 min, followed by 40 cycles of 15 s at 95 °C and 1 min at 60 °C.
The relative quantification of gene expression was determined using the 2–ΔCt method (adapted from Reference [37 (link)]). Using this method, we obtained the fold variation in AQP gene expression normalized to an endogenous control (β-actin).
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2

Total RNA Extraction and Quantification

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We performed total RNA extraction from the whole body or specific tissues if indicated, using the miRNeasy extraction kit (QIAGEN). A 500-ng sample from each RNA extraction was treated with DNase (Promega) and reverse transcribed with first Strand cDNA Synthesis Kit (Roche) and random hexamers primers (Roche). RNA quantity and quality was estimated by spectrophotometric absorption at 260 nm using a Nanodrop Spectrophotometer ND-1000 (NanoDrop Technologies).
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3

Gene Expression Analysis in Adipose Tissue

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Total RNA isolation from VAT was isolated using RNeasy Lipid Tissue Mini Kit according to the manufacturer´s instructions (Qiagen GmbH, Hilden, Germany). To generate first-strand cDNA synthesis, we used 1 μg of total RNA, Moloney Murine Leukemia Virus reverse transcriptase, and random hexamers primers (Roche Diagnostic, Rotkreuz, Switzerland) as indicated by the manufacturer. We used commercially available TaqMan primer/probe mix (Integrated DNA Technologies Inc, Madrid, Spain) for the quantification of C/EBP-α (Hs.PT.58.3605816, RefSeq. NM_001079533), PPAR-γ (Hs.PT.58.4423955, RefSeq. NM_005036), PGC-1α (Hs.PT.58.4461873, RefSeq. NM_002630), NF-κB (Hs00765730_m1, RefSeq. NM_001165412.1 and NM_003998.3), DNTM3a (Hs.PT.58.28037916, RefSeq. NM_001130823), and PPIA (4326316E, RefSeq. NM_021130.3), used as endogenous controls for the target genes. Gene expression was carried out by real-time PCR using an Applied Biosystems 7500 Fast Real-Time PCR System (Applied Biosystems, Darmstadt, Germany) with TaqMan technology. Changes of gene expression were calculated by the 2−ΔΔCt method [56 (link)]. The results of the expression were represented as the target gene/PPIA ratio.
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4

Quantitative RT-PCR Analysis of Adipogenic Genes

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Total RNA isolation from VAT (~100 mg) was performed using RNeasy Lipid Tissue Mini Kit (Qiagen GmbH, Hilden, Germany), according to the manufacturer’s instructions. To generate first-strand cDNA synthesis, we used 1 μg of total RNA, Moloney Murine Leukemia Virus reverse transcriptase and random hexamers primers (Roche Diagnostic, Rotkreuz, Switzerland), as indicated by the manufacturer. The specific primers for PPAR-γ2, C/EBP-α and FOXO1 were designed using Primer-Blast (NCBI) and were synthesized at Sigma-Aldrich (Sigma Aldrich, Madrid, Spain). qPCR was performed using LightCycler technology as described by the provider (Roche Diagnostic, Rotkreuz, Switzerland), with SYBR Green detection. Gene expression was normalized using β-actin as internal control; β-actin gene was selected as an appropriate reference gene from validation methods described previously and used to determine ΔCt values [33 (link),34 (link)]. Changes of gene expression were calculated by the 2−ΔΔCt method [35 (link)]. The results of the expression were represented as the target gene/β-actin ratio.
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5

Total RNA Extraction and Reverse Transcription

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We carried out total RNA extraction from the whole body (excluding the digestive tube to avoid intestine parasites) or specific tissues using the miRNeasy extraction kit (QIAGEN). A sample of 500-ng from each RNA extraction was treated with DNase (Promega) and reverse transcribed with first Strand cDNA Synthesis Kit (Roche) and random hexamers primers (Roche). RNA quantity and quality was estimated by spectrophotometric absorption at 260 nm using a Nanodrop Spectrophotometer ND-1000 (NanoDrop Technologies).
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6

mRNA Quantification by RT-qPCR

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Total mRNA from all studied tissues was extracted according to the instructions provided by the manufacturer, using TRIZOL (Life technologies). The mRNA concentration was measured using a Nanodrop 1000 (Thermo Scientific, Wilmington, MA). Conversion to cDNA was performed using SuperScript II (Life technologies) with oligo (dT2), Random Hexamers primers and RNAsine (Roche) according to the protocol provided by the manufacturer. Quantification of mRNA expression was performed using the SYBR Green real time PCR technology (Roche). Reactions were performed in duplicate in a 384-well plate using the Light Cycler (Roche). Primers are listed in Supplemental Table 2. Gene expression was normalized with β2-microglobulin and cyclophillin as housekeeping genes. Relative gene expression between genotypes was assessed through the ΔΔCt method [10] .
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