Total RNA was extracted from cultured cells using
TRIzol Reagent (Invitrogen), according to the manufacturer’s protocol. The RNA was treated with
RNase-free DNase I (Sigma-Aldrich, St. Louis, MO, USA) to avoid contamination with genomic DNA. Extracted RNA was quantified with Nanodrop™ 2000c spectrophotometer. For template cDNA synthesis, 1 µg of total RNA was reverse transcribed in a 20 µL final volume using
random hexamers primers (Roche Applied Science, Penzberg, Germany) and 200 units of
M-MLV reverse transcriptase (Invitrogen), as previously described [36 (
link)].
Real-time PCR reactions were carried out using a
CFX96 Real-Time System C1000 (BioRad, Hercules, CA, USA), the
TaqMan Universal PCR Master Mix (Applied Biosystems Thermo Fisher Scientific, Waltham, MA, USA), and the following specific TaqMan pre-designed gene expression primers: AQP1 (Hs01028916_m1), AQP3 (Hs01105469_g1), AQP5 (Hs00387048_m1), and ACTB (Hs99999903_m1) (Applied Biosystems, ThermoFisher Scientific, Waltham, MA, USA). The cDNA was amplified at the following conditions: 50 °C for 2 min, 95 °C for 10 min, followed by 40 cycles of 15 s at 95 °C and 1 min at 60 °C.
The relative quantification of gene expression was determined using the 2
–ΔCt method (adapted from Reference [37 (
link)]). Using this method, we obtained the fold variation in AQP gene expression normalized to an endogenous control (β-actin).
Rodrigues C., Pimpão C., Mósca A.F., Coxixo A.S., Lopes D., da Silva I.V., Pedersen P.A., Antunes F, & Soveral G. (2019). Human Aquaporin-5 Facilitates Hydrogen Peroxide Permeation Affecting Adaption to Oxidative Stress and Cancer Cell Migration. Cancers, 11(7), 932.