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167 protocols using cellfix

1

Flow Cytometry Analysis of CD39 Expression

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Flow cytometric analyses of the transfected ECs, HEK293 and PAE cells was performed to detect CD39 surface expression. Thus, 24 h, 5 days or 7 days after transfection, cells were washed with PBS (w/o Ca+/Mg+) and split into two 50 μl aliquots. One aliquot of each sample was stained with 5 μl anti-CD39-fluorescein isothiocyanate (FITC) antibody (Abcam; Clone A1) or 5 μl anti-CD39-phycoerythrin (PE) antibody (BD Bioscience) for 20 min at room temperature in the dark, whereas the second sample was incubated with 5 μl PBS (w/o Ca+/Mg+) as control. After antibody staining, cells were washed and fixed using 250 μl 1x CellFix (BD Biosciences). Flow cytometry was performed within 6 h using a FACScan cytometer (BD Biosciences, USA) and a total of 10.000 events were acquired in each sample.
CD39 expression of HEK293 cells was also analyzed under a fluorescence microscope. Therefore, the cells were fixed with 500 μl 1x CellFix (BD Biosciences) and incubated for 15 min at room temperature. Afterwards, cells were washed twice and stained with 10 μl anti-CD39-FITC antibody (Abcam, Clone A1) diluted in 500 μl PBS for 20 min at room temperature. Again, the cells were washed twice with PBS and fluorescence microscopic analyses were performed using an inverse microscope (Axiovert 135, Zeiss, Germany).
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2

Senescence Marker Expression on T Cells

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Phenotype and expression of senescence markers on CD4 þ and CD8 þ T cells was measured after extracellular staining with the monoclonal antibodies described in Table S1, http://links.lww.com/QAD/A798. All incubations were performed at 48C (20 min) after which cells were fixed (cellfix; BD, Heidelberg, Germany) and analysed by flow cytometry.
CD8 R T-cell stimulation and intracellular cytokine staining CD8 þ T-lymphocytes (at 2 Â 10 6 cells/ml) were incubated with 2 mg/ml Gag-peptide pool (see above) and antiCD107a-FITC (BD) for 6 h. As a positive control, PMA and ionomycin (Sigma-Aldrich, The Netherlands; 5 ng/ml and 1 mg/ml respectively) were used. After 1.5 h, Brefeldin A (3 mmol/l, BD) and Monensin (2 mmol/l BD) were added. Surface staining was performed with monoclonal antibodies described in Table S1, http:// links.lww.com/QAD/A798. After fixation and permeabilization (BD) for 10 min, cells were stained intracellularly (see Table S1, http://links.lww.com/QAD/A798) and fixed in cellfix (BD) for flowcytometry.
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3

Whole Blood Piecemeal Degranulation Assay

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Whole blood (500 μl/tube) was exposed to a stimulus known to induce piecemeal degranulation—100 ng/ml exotoxin (CCL11)(BioLegend, San Diego, CA), for 2 or 5 h at 37°C. Untreated samples were also included. After incubation, 200 μl of blood was removed, red blood cells were lysed, and the sample was then fixed (BD CellFix™, Becton Dickinson, Belgium).
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4

Breast Cancer Cell Phenotyping

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MCF7 and MDA-MB-468 cell lines were incubated with the study fluids (20 different WF for each group) for four days and then detached using Accutase (BioWest, France). Cells were washed with 5% BSA in 1x PBS and labeled with fluorochrome conjugated antibodies: Alexa Fluor® 647 CD324 (E-Cadherin, CDH1) (BD 563571), Alexa Fluor® 488 CD325 (N-Cadherin, CDH2) (BD 562119), APC CD44 (BD 559942), PE CD24 (BD 555428) (Becton Dickinson, CA) by incubating at 4 °C for 30 minutes in the dark. Cells were washed twice with 5% BSA in 1x PBS, fixed with BD Cell FIX (Becton Dickinson, CA) and analyzed on a BD Accuri C6 Flow Cytometer. Unstained, isotype, and single antibody controls were performed for each cell line. All data were analyzed using FlowJo v10 analysis software.
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5

Flow Cytometric Analysis of CD321 Expression

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The cells were labeled with the FITC anti-human CD321 (F11R/JAM-A) Mouse IgG1 Antibody or with the relevant isotype control (BioLegend). Labeled cells were washed, harvested with ice cold EDTA/PBS, fixed with BD CellFix (Becton–Dickinson), and analyzed by FACS Canto II flow cytometer (Becton–Dickinson) upon the fluorescence excitation at 488 nm and the emission at 517 nm. Data were recorded with DIVA (Becton–Dickinson) and analyzed using FCSalyzer software (https://sourceforge.net/projects/fcsalyzer/).
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6

Endothelial Cell VCAM-1 and ICAM-1 Expression

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Expression of VCAM-1 and ICAM-1 were measured from endothelial cells treated with vehicle and different doses of native and oxidized albumin for 24 hours. After treatment, HUVECs were obtained by mechanical disruption and washed once with PBS 1×. Next, 10 µL VCAM-1 (CD106-PE conjugate, BD Pharmingen [BD Pharmingen, San Diego, CA, USA]) and 10 µL ICAM-1 (MHCD5401-FITC conjugate, Invitrogen, Waltham, MA, USA) antibodies were used to assess the expression in the different experimental conditions. HUVECs were incubated with the antibodies for 20 minutes in darkness. Then, cells were washed with PBS 1× and fixed with BD CellFIX™ (Becton Dickinson, Cat Number 340181 [Becton Dickinson Bioscience, San José, CA, USA]). Finally, we proceeded to the data acquisition in the cytometer, with HUVECs without antibody labeling used as a reference (as a negative control). We performed the experiment in duplicates (n=3). For the analysis of data acquired in the cytometer, we used the mean fluorescence intensity (MFI) of different antibodies (VCAM-1-PE and ICAM-1-FITC).
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7

Platelet Activation Measurement Protocol

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LC–MS grade, acetonitrile (MeCN), methanol (MeOH), tetrahydrofuran (THF), dimethyl sulfoxide, MS grade formic acid (HCOOH) and all the analytical standards of testosterone, dihydrotestosterone, α-estradiol, β-estradiol, methyltestosterone, as well as the hormone preparations used for in vitro measurements of platelet activation/reactivity were obtained from Sigma (St. Louis, MO, USA) and had a minimum purity specification of 99%. Nitric acid (HNO3) was purchased from POCH (Gliwice, Poland). Dichloromethane (DCHM, HPLC grade) was provided by VWR International (Radnor, PA, USA).
PBS was from Avantor Performance Materials Poland S.A. (Gliwice, Poland). Arachidonate, equine tendon collagen and ADP were from Chrono-Log Corp. (Havertown, PA, USA). Fluorolabelled monoclonal antibodies (moAbs): anti-CD61/PerCP, antiCD62/PE, PAC-1/FITC, isotype controls IgG/PE and IgM/FITC, as well as CellFix (1% formaldehyde in PBS) were from Becton Dickinson (San Diego, CA, USA). Ultrapure water was obtained from Milli-Q purification system (Millipore, Bedford, MA, USA). Nitrogen (NM32LA Nitrogen Generator, Peak Scientific Instruments, Billerica, MA, USA) was used as a drying gas.
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8

Quantifying T Cell Activation by CD69 Expression

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Surface expression of CD69 in T cells was used as a marker of T cell activation. T cells obtained from coculture experiments were transferred to 5 mL polystyrene tubes and washed with PBS. Viability staining was performed with efluor 506 viability dye (Thermo Fisher) for 15 min at 4°C in the dark. After one wash with FACS buffer (PBS+2% FBS), cells were stained for 30 min at 4°C in the dark with the following antibodies: anti-CD3 Pacific Blue, anti-CD4 PE-Cy7, anti-CD8 APC-Cy7, anti-CD69 APC (Biolegend). After incubation, cells were washed once more and fixed with Cell Fix (Becton Dickinson) for 20 min at room temperature. Samples were run in an LSRII flow cytometer (BD Biosciences) and results analysed with FlowJo software.
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9

CD8+ T Cell Intracellular Cytokine Assay

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One million splenocytes were added to each well of a 96-well round-bottomed plate (Costar, Corning, NY), pulsed with 2 μg/mL P18-I10 peptide and kept at 37°C and 5% CO2 for 60 min, followed by the addition of GolgiStop (Becton Dickinson) containing monensin. After 5 h of incubation, the reaction was terminated by transferring the plate to 4°C. The cells were washed with wash buffer (PBS, 2% fetal calf serum, and 0.01% azide) and blocked with anti-CD16/32 (BD Biosciences) at 4°C for 30 min. All subsequent antibody stains were performed using the same conditions. Cells were then washed and stained with anti-CD8-PerCP (BD Biosciences) and anti-CD107a-fluorescein isothiocyanate (FITC), washed again, and permeabilized using the Cytofix/Cytoperm kit (BD Biosciences). Perm-wash buffer (BD Biosciences) was used to wash cells before staining with anti-IFN-γ-APC and anti-TNF-α-PE (BD Biosciences). Cells were fixed with CellFIX (Becton Dickinson) and stored at 4°C until analysis. All chromogen-labeled cells were analyzed in a Becton Dickinson FACScalibur, using the CellQuest software (Becton Dickinson) for acquisition and the FlowJo software (Tree Star, Ashland, OR) for analysis.
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10

Platelet Activation Assay Protocol

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Phosphate-buffered saline (PBS) was from Avantor Performance Materials Poland S.A. (Gliwice, Poland). Arachidonate, collagen, and ADP were from Chrono-Log Corp. (Havertown, PA, USA). Dimethyl sulfoxide, cytochrome c, sodium dodecyl sulphate (SDS), Ellman's reagent (5,5′-dithiobis-2-nitrobenzoic acid, DTNB), glutathione (reduced), HCl, 2,4,6-trinitrobenzenesulphonic acid (TNBS), ethanol, ethyl acetate, guanidine hydrochloride, xylenol orange, Fe(NH4)2(SO4)2, and perchloric acid were from Sigma-Aldrich (St. Louis, MO, USA). Pierce™ BCA Protein Assay Kit was from Thermo Fisher Scientific (Waltham, Massachusetts, USA). Fluorolabelled monoclonal antibodies (moAbs)—anti-CD61/PerCP, antiCD62/PE, PAC-1/FITC, isotype antibodies, and CellFix were from Becton Dickinson (San Diego, CA, USA).
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