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45 protocols using anti cd3 cd28

1

Activation of Naive CD4+ T Cells

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ACH2 cells (NIH AIDS Reagent Program) were cultured in RPMI medium (Gibco) supplemented with 10% heat-inactivated fetal bovine serum (FBS, Sigma Aldrich) and 1% of penicillin/streptomycin mix (P/S, Gibco). HEK 293T cells (ATCC) and TZM-bl cells (NIH AIDS Reagent Program) were maintained in DMEM medium (Gibco) supplemented with 10% heat-inactivated FBS and 1% P/S. All cell lines were incubated at 37 °C in presence of 5% CO2. PBMC were isolated by Histopaque-1077 density centrifugation. The separation and culture of naive CD4+ T cells were conducted according to our previous study16 (link). The culture conditions used in this study were as follows: HSP condition – cell cultured with IL-15 and −7 (10 μg/ml, PeproTech); HSP + TCR condition – cells cultured with IL-15 and −7 and activated by anti-CD3 (5 μg/ml, BD Biosciences) and CD28 (1 μg/ml, BD Biosciences) on day 12; TCR condition – cells activated with anti-CD3/CD28 antibodies on day 0 and cultured with IL-2 (2 ng/ml, PeproTech); TCR + TCR condition – cells activated with anti-CD3/CD28 on day 0, cultured with IL-2 and second time activated with anti-CD3/CD28 at day 12.
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2

Galectin-3 Modulation of CD8+ T Cell Activation

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CD8+ T cells were negatively isolated from total splenocytes using Dynal CD8+ negative isolation kits (Invitrogen), and stimulated for 3 days with anti-CD3/CD28 (Invitrogen) beads at a T cell to bead ratio of 1:1 according to the manufacturer’s recommendations (13 (link)). For suppression studies, cells were also incubated with the indicated amount of recombinant mouse or human galectin-3. For human studies, cells were also incubated with a 5-fold molar concentration of purified IgG from patient’s serum, as described in the figures. After 3 days of activation, CD8+ T cells were assessed for IFNγ production by ICS. Beads were removed by magnetic separation and cells were plated with fresh anti-CD3/CD28 beads in a 96-well assay plate at a T cell to bead ratio of 1:1 in the presence of monensin (GolgiStop, Invitrogen) for 5 hours at 37°C. Culture media were also supplemented with fresh galectin-3 at the indicated concentrations. Following the 5-hour incubation period, ICS studies were conducted as above.
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3

DAPT Modulation of Regulatory T Cells

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DAPT (CalBiochem, Merck Chemicals International, Germany) was reconstituted in DMSO to a concentration of 10 mM. CD4+ T cells were stimulated with DAPT at a final concentration of 20 μM for 24 h in the presence of anti-CD3/CD28 (eBioscience, San Diego, CA, U.S.A.; final concentration 1 mg/ml), and cells and supernatants were harvested for further experiments. Cells with DMSO stimulation were used as controls. In certain experiments, purified CD4+CD25+CD127dim/− Tregs were stimulated with DAPT or DMSO for 24 h. Cells were washed twice, and 2.5×104 of Tregs were co-cultured with autologous 105 of CD4+CD25 T cells in the presence of anti-CD3/CD28 (eBioscience) for 96 h with replacement of fresh medium containing 20 U/ml of recombinant human IL-2 (Sigma–Aldrich) 48 h post mixture.
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4

Activation of Human Lymphocytes

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Peripheral blood mononuclear cells from healthy donors were separated on a Ficoll-Hypaque gradient. Monocytes were eliminated by plastic adherence. Lymphocytes were resuspended in RPMI 1640 medium supplemented with 10% heat-inactivated fetal calf serum (BioWhittaker) and stimulated either with anti-CD3/CD28, anti-CD3 alone (both from Thermo Fisher Scientific, USA), or human recombinant IL-2 at the final concentration of 20 U/ml (equal to 10 ng/ml; Roche, USA). The anti-CD3 antibody was pre-coated to plates (1 µg/ml). Anti-CD28 (1 µg/ml) was added in soluble form. The anti-CD3 and anti-CD-28 antibodies were purchased from Beckman-Coulter, USA.
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5

Comprehensive Immune Cell Profiling of Tumor Samples

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Tumor tissues were first minced and passed through 70 μm filters to obtain single-cell suspension. Cells were then stained with Viability Ghost Dye 510 (Tonbo Biosciences, 13-0870) for 10 min at 4 °C and blocked by anti-CD16/32 (Tonbo Bioscience, 70-0161) (1 to 100 dilution) at 4 °C for 10 min. Cells were further stained with anti-CD45 (Invitrogen, 11-0451-82), anti-CD3 (Tonbo Biosciences, 65-0031-U100), anti-CD8 (BD Pharmingen, 557654), anti-CD44 (BioLegend, 103041), anti-CD62L (BioLegend, 104424), anti-PD1 (BD Biosciences, 563059), anti-TIM3 (BioLegend, 119704), and anti-LAG3 (Invitrogen, 25223182) in staining buffer (2% FBS in PBS). For nuclear transcription factor staining, cells were permeabilized using a FoxP3/transcription factor staining kit (eBioscience, 00-5523-00) and then stained with anti-Ki67 (Invitrogen, 48-5698-82). For cytokine staining, cells were stimulated by anti-CD3/CD28 (Thermo Fisher, 11452D) at 37 °C overnight and then treated with BD GolgiPlug (BD Biosciences, 550583) at 37 °C for 5 h. After surface staining, cells were permeabilized using a BD Cytofix/Cytoperm kit (BD Biosciences, 554714) and stained with anti-IFNγ (BioLegend, 505826) and anti-TNFα (BioLegend, 506314). All antibodies were used at 1:150 dilution. Cells were then fixed with 1% paraformaldehyde and analyzed by BD FACSCelesta. Data were analyzed using BD FACSDiva and FlowJo software.
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6

Isolation and Stimulation of T-Cell Subsets

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After the peripheral blood mononuclear cells (PBMCs) were isolated from healthy donors using Polymorphprep (1,114,683, Axis-Shield, Norway) with density gradient centrifugation, the CD4+ T cells and CD8+ T cells were further purified using anti-CD4 MicroBeads (130–045-101, MilteniyBiotec, Germany) and anti-CD8 MicroBeads (130–045-201, MilteniyBiotec, Germany) following the manufacturer’s instructions. All the cells were cultured in RPMI 1640 medium (Gibco, Grand Island, NY, USA) supplemented with 10% fetal bovine serum (FBS) (Gibco, Grand Island, NY, USA) and 1% penicillin/streptomycin (Gibco, Grand Island, NY, USA) at 37 °C. These isolated cells were stimulated with or without IL-8 (100 ng/ml, Peprotech, NJ, USA) and plate-bound anti-CD3/CD28 (5 μg/ml, Thermo Scientific, Waltham, MA, USA) in the presence of IL-2 (10 ng/ml) for the indicated time. All samples were collected with the informed consent of the donors, and all related procedures were approved by the Institutional Review Board of Nanjing University of Chinese Medicine. MFC, a mouse stomach adenocarcinoma cell line, was purchased from Shanghai Cafa Biological Technology Co. Ltd. (Shanghai, China).
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7

Isolation and Activation of Tumor-Infiltrating CD8 T Cells

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Prostate tumor single cells were isolated by using the Mouse Tumor Dissociation Kit (Miltenyi Biotec). Debris were removed using Debris Removal Solution (Miltenyi Biotec). CD8 T cells were isolated using CD8 TIL Microbeads (Miltenyi Biotec) and loaded with Cell Tracer Violet (eBioscience). Isolated CD8 T cells were cultured with anti-CD3/CD28 (Thermo Fisher Scientific) and 30 U of recombinant mouse IL2 (eBioscience) for 3 days, or stimulated with PMA/Ionomycin (eBioscience) in the presence of GolgiPlug (BD Pharmingen) for 4.5-5 hours. Cells were stained with Zombie Nir (BioLegend), followed by surface marker staining with APC-CD8 (eBioscience). Cells were subsequently fixed and permeabilized using Fixation/Permeabilization Solution Kit (BD Pharmingen) and stained with FITC-IFNg and PE-granzyme B following the manufacture's protocols.
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8

CD4+ T Cell Proliferation Assay

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About 2 × 105 CD4+ T cells were suspended in 96-well plates (Sigma–Aldrich, St. Louis, MO) with 200 µL of RPMI, 50 U/mL of IL-2, penicillin, and streptomoycin. The CD4+ T cells were stimulated with 1.25 µL of anti-CD3/CD28 (Invitrogen). After 3 days of incubation, 10, 50, and 100 nM of 1,25 vitamin D3 (Sigma–Aldrich) was added to the wells. On the sixth day, 0.25 µCi of thymidine (Perkin Elmer, Waltham, MA) was added to each well. Proliferation was measured on day 7 through Beckman LS 6500 Scintillation Counter (Beckman Coulter Inc., Brea, CA).
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9

PBMC Isolation and Transfection

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PBMC will be isolated over lymphoprep and T cells will be isolated using magnetic selection (Miltenyi Biotec). Cells will be cultured with stimuli such as PMA/ionomycin and anti-CD3/CD28 (Invitrogen). Cells will be transfected in order to silence or overexpress miR-21 or mir-210 (see paragraph “Transfection experiments”).
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10

Antibody Staining for Cell Phenotyping

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Directly conjugated monoclonal antibodies against CD8 and CD45RA and their isotypes and unconjugated CD8 antibodies were obtained from BD Biosciences (San Diego, CA). Anti-CCR7 and isotypes were purchased from R & D systems, Minneapolis, MN, and anti-CD3/CD28 was Life Technology, Camarillo, CA. TNF-α was obtained from Laguna Scientific, Laguna Niguel, CA. Antibodies to FLIP and IAP were purchased from Transduction Laboratories, San Diego, CA, and antibodies to phospho IKKα/β, phospho IκB, phospho JNK, phosphor TAK1 TAK1, and TAB2 were purchased from Cell Signaling Technologies, Inc. Beverly, MA. Antibodies to A20, TRAF2 and RIPK1 were obtained from Santa Cruz Biotechnology, Dallas, TX. In Situ Cell Death Detection Kit was purchased from Boehringer-Manheim, Indianapolis, IN.
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