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112 protocols using tert butyl hydroperoxide

1

Modulating NF-κB and DNA Damage Signaling

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To induce NF-κB signalling, human recombinant TNFα (PeproTech) was used at 10 ng/ml for 0.5-6 h. ATM inhibitor AZD1390 (SelleckChem) was used at a final concentration of 10 nM for at least 1 h and up to 9 days (DMSO served as a control) in HMC3 cells and at 100 nM in LUHMES cells during days 2–5 of differentiation. For long-term inhibitor treatments, the medium with inhibitor was renewed every 48 h. For the inhibitor wash-out, cells were washed with PBS and cultured in the absence of inhibitor for an additional 2 days. To induce ATM-dependent phosphorylation, cells were treated with 1 μM camptothecin (CPT; Cambridge Bioscience) for 1 h. To induce apoptosis, cells were treated with 0.33 μM staurosporine (Merck) for 16 h. Treatment with 2 μM hydrogen peroxide for 5 min (H2O2; Merck) was used to induce DNA strand-breaks and oxidative damage. To induce persistent DNA damage, cells were treated with 0.5 μM etoposide, or DMSO as a control, or with 100–250 μM tert-butyl hydroperoxide (tBHP) for up to 6 days (Merck). The medium with tBHP or etoposide was renewed every 24 or 48 h, respectively. A scavenger of superoxide radicals, Tiron (Merck), was used at 10 μM over a 72-h period, and the medium containing the compound was changed daily.
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2

Microencapsulated Phase Change Materials

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Styrene monomer was purchased from Sigma-Aldrich and used for synthesizing shell material of the microcapsules. Paraffin 42–44 obtained from Merck was used as PCM core material. Ferrous sulfate heptahydrate (FeSO4·7H2O), ammonium persulphate ((NH4)2S2O8), sodium thiosulfate (Na2O3S2) and tert-butyl hydroperoxide purchased from Merck were used as initiators in the polymerization reaction. Triton X-100 (Merck) was used as a surfactant. Ethylene glycol di-methacrylate (EGDM, Merck) was used as a crosslinking agent.
ortho-Phosphoric acid (oPA) and pentaerythritol (PER) were supplied from Sigma-Aldrich Company and were used as fire retardants. The cement (CEM I 42,5 R) used in preparing concrete block samples was provided by Oyak Çimento, Adana. All the chemicals used in this study were analytical grade and used as received without any further purification step.
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3

Comprehensive Antioxidant Characterization Protocol

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All the chemicals, including Folin-Ciocalteu’s phenol reagent, polyvinylpyrrolidone (PVP), sodium carbonate, tannic acid (98% purity), aluminum chloride hexahydrate (AlCl3·6H2O; Ph Eur purity), quercetin (98% purity), 1,1-diphenyl-2-picrylhydrazyl radical (DPPH; 95% purity), 2,2-azobis (2-methylpropionamidine) dihydrochloride (AAPH; 97% purity), 2,2-azino-bis (3-thylbenzothiazoline-6-sulfonic acid) diammonium salt (ABTS; 98% purity), trolox (97% purity), ferrozine (97% purity), iron (II) sulfate heptahydrate (FeSO4·7H2O; 99% purity), iron (III) chloride (FeCl3·6H2O; 97% purity), hydroxylamine hydrochloride (98% purity), rutin (99% purity), bovine serum albumin, glucose, fructose, sodium azide, iron (II) chloride (FeCl2·4H2O; 99% purity), tert-butyl hydroperoxide (tBOOH; 80% purity), and methanol were purchased from Merck (Darmstadt, Germany). RPMI 1640 medium and fetal bovine serum were provided by Aurogene (Rome, Italy).
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4

Cytotoxicity and Antioxidant Assays

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All chemicals, including the Folin–Ciocâlteu phenol reagent, aluminium chloride hexahydrate (AlCl3 × 6 H2O; Ph Eur purity), quercetin (98% purity), tert-butyl hydroperoxide (tBOOH, 70% wt in H2O), 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT; 98% purity), neutral red, apoptosis kit, 2,7-dichlorofluorescein diacetate, modified Griess reagent, Annexin-V-Cy3 detection kit, Triton X-100, anti-actin antibody, the solvents ethanol (EtOH; 99.5% purity) and methanol (MeOH; 99.5% purity) and the standard phenolics (>95% purity) used for the chromatographic analysis, were purchased from Merck (Darmstadt, Germany). The materials for cell cultures, including media, cofactors and antibiotics, were provided by Aurogene (Rome, Italy). The reagents for antiviral studies, if not otherwise specified, were purchased from Invitrogen (Carlsbad, CA, USA).
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5

Cytotoxicity and Oxidative Stress Evaluation

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If not otherwise specified, all the substances, among which were 3-(4,5 dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide (MTT; CAS number: 298-93-1; purity ≥ 98%), tert-butyl hydroperoxide (tBOOH; 70% wt in H2O), 2,7-dichlorofluorescein diacetate (DCFH-DA; CAS number: 4091-99-0; purity ≥ 97%), anti-NF-E2 primary antibody (ABE413), montelukast (MNT; CAS number: 151767-02-1; purity ≤ 100%), and the solvent dimethyl sulfoxide (DMSO; CAS number: 67-68-5; for molecular biology), were purchased from Merck (Darmstadt, Germany). All the materials used for cell cultures, including the RPMI 1640 medium, fetal bovine serum, cofactors, and antibiotics, were provided by Aurogene (Rome, Italy).
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6

Antioxidant Agents for Cell Assays

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Seleno-L-methionine (SeMet; ≥98% purity), tert-Butyl hydroquinone (tBHQ; 97% purity), and tert-Butyl hydroperoxide (tBOOH; 70% solution in water) were purchased from Sigma-Aldrich (Oakville, ON, Canada).
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7

Mitochondrial function evaluation protocol

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ADP, Alamethicin, 3-amino-1,2,4-triazole, P1,P5-di(adenosine-5′)pentaphosphate (Ap5A), Amplex Red, ATP, carbonyl cyanide m-chlorophenylhydrazone (CCCP), cyclosporine A (CsA), EGTA, fatty acid-free BSA, glucose, glucose-6-phosphate dehydrogenase, glutamate, hexokinase, horseradish peroxidase, malate, mannitol, MgCl2, NaCl, NADP, (NH4)2SO4, oligomycin, Phenol Red, phosphoenolpyruvate, pyruvate kinase, rotenone, succinate, sucrose, tert-butyl hydroperoxide and Tris were from Sigma-Aldrich (Saint Louis, MO, USA); Coomassie G-250 was from MP Biomedicals (Santa Ana, CA, USA); CaCl2, KCl, K2HPO4, KH2PO4 and Safranine O were from Merck (Darmstadt, Germany); Dihydroethidium, Mitotracker Green FM, Propidium Iodide and Sytox Green were from Life Technologies (Carlsbad, CA, USA). Other reagents of the highest purity available were from domestic suppliers. MitoQ, SkQ1 and SkQ3 were kindly provided by Dr. D.S. Esipov from the A.N. Belozersky Research Institute of Physico-Chemical Biology, MSU, Moscow, Russia.
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8

Fungal Growth and Stress Response

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Rich medium (YPD) and synthetic complete medium (SC) were prepared as previously described [103 ]. Minimal medium contained 8.38 g/l yeast nitrogen base (BD Biosciences), 6.25 g/l ammonium sulfate (Sigma Aldrich) and 2 g/l glucose (Sigma Aldrich). Fungal strains were routinely grown on YPD plates at 30°C. Hydrogen peroxide, tert-butyl hydroperoxide, Calcofluor White, Congo Red, cadmium chloride, sodium chloride, luminol and HRP Type VI were obtained from Sigma Aldrich. Voriconazole, Itraconazole and Amphotericin B were purchased from Discovery Fine Chemicals Ltd. DMEM and RPMI media were purchased from PAA.
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9

DHEA Synthesis and Purification

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DHEA (Fig. 1) (purity 99%), internal standard (IS) 16-methylene-17α-hydroxypregnenolone 3-acetate (Fig. 1) (purity 99%), sodium borohydride powder (NaBH4, purity ≥ 98.0%), lithium hydroxide, (LiOH, grade 98%), acetic anhydride (Ac2O, purity ≥ 99%), tertbutyl hydroperoxide (TBHP, solution 70% in H2O), Cerium (III) chloride heptahydrate (CeCl3, 99.9% trace metals basis), sodium chlorite (NaClO2, technical grade 80%), sodium sulfate (Na2SO4, ≥ 99.0%, anhydrous, granular), and formic acid (grade ≥ 95%) were purchased from Sigma-Aldrich Chemical Co (St. Louis, Missouri, USA). Solvents dichloromethane (CH2Cl2), methanol (MeOH), tetrahydrofuran (THF), pyridine (PY), ethyl acetate (EtOAc), hexane (HEX) and acetonitrile (ACN) were obtained from SINTORGAN S.A. (Buenos Aires, Argentina). All solvents and reagents were of analytical grade, with the exception of those used in HPLC-MS/MS, which were HPLC grade.
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10

Stimulation of Cells with IGF-1 and Oxidants

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For IGF-1 stimulation, cells were serum-starved for 20–24 h and stimulated with 100 μg/ml IGF-1 (R&D Systems) for 10 min. For H2O2 and tert-butyl hydroperoxide treatments, cells were serum-starved for 20–24 h in DMEM lacking pyruvate and then stimulated with the indicated concentrations of H2O2 (Fisher) or tert-butyl hydroperoxide (Sigma-Aldrich) in Hank’s balanced salt solution (HBSS) (Gibco).
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