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5 protocols using sars cov 2 nucleocapsid antibody

1

SARS-CoV-2 Tissue Distribution Analysis

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Organs obtained from individual mice euthanized at various time points were fixed in 10% neutral buffered formalin for 7 days. Sections (4 μm thick) were stained with hematoxylin and eosin (H&E) and examined through light microscopy. For immunohistochemistry, fixed tissues were paraffin-embedded, sectioned, and stained with rabbit-anti ACE2 (Abcam, ab108252, 1:200), SARS-CoV-2 nucleocapsid antibody (Sino Biological, China, 40588-R001, 1:200). Goat anti-rabbit immunoglobulin conjugated to peroxidase (Maxim Bio, Fujian, China) was used as secondary antibody. Screening of sections was performed with an Olympus BX51 microscope coupled to a camera.
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2

Antibody Panel for SARS-CoV-2 Proteins

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Antibodies against the following proteins were used: TMEM16A (Abcam, ab64085), TMEM16F (Abcam ab234422 and Sigma-Aldrich HPA038958-100UL), ACE2 (Abcam ab87436 and ab15348), V5 (Thermo Fisher Scientific R96025), V5-488 (Thermo Fisher Scientific 377500A488), mouse-HRP (Abcam ab6789), rabbit-HRP (Abcam ab205718), β-actin-HRP (Sigma-Aldrich A5316), Napsin (Roche 760-4867), Surfactant B (Thermo Fisher Scientific MS-704-P0), mouse-Biotin (Vector Laboratories BA-9200), SARS-CoV-2 Spike protein (GeneTex GTX632604), SARS-CoV-2 Nucleocapsid antibody (Sino Biological 40143-R001).
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3

SARS-CoV-2 Live Virus Inhibition Assay

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Wild-type SARS-CoV-2 live virus inhibition assay was performed in the BSL-3 Facility, Fudan University. Briefly, peptides were first incubated with SARS-CoV-2 (100 TCID50) for 30 min and then added into the Vero-E6 cell line seeded in a 96-wall plate. After 1 h incubation, the supernatants containing peptide and SARS-CoV-2 were changed for fresh DMEM containing 5% FBS. After 48 h culture, Vero-E6 cells infected with SARS-CoV-2 were fixed with 4% paraformaldehyde, followed by 0.2% Triton X-100 treatment. Next, an immunofluorescence assay was performed to detect the nucleocapsid protein of SARS-CoV-2 in Vero-E6 cells [26 (link)]. The SARS-CoV-2 nucleocapsid antibody (1:200, Sino Biological, Beijing, China) was used as a primary antibody, the Alexa Fluor 488 goat anti-rabbit IgG (1:100, Thermo Fisher) was used as a secondary antibody, and DAPI (Thermo Fisher, Waltham, MA, USA) was used to stain the nucleus.
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4

Evaluating Cell Lines for SARS-CoV-2 Research

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The human kidney epithelial cell line Lenti-X 293T was purchased from TaKaRa. The human liver cell line Huh7.5.1 was provided by Dr. Francis Chisari (Scripps Research Institute). The baby hamster kidney fibroblast cell line BHK21 (CCL-10), African green monkey kidney epithelial cells (Vero E6; CRL-1586), Caco-2 (HTB-37), Calu-3 (HTB-55), and A549 (CCL-185) were purchased from the American Type Culture Collection. A549-hACE2 (NR-53821) cells were obtained from BEI Resources. All cell lines were maintained in Dulbecco’s Modified Eagle Medium supplemented with 5% penicillin and streptomycin, and 10% fetal bovine serum (FBS) at 37°C with 5% CO2. The SARS-CoV-2 Nucleocapsid antibody (40143-MM05) was purchased from Sino Biological. The SARS-CoV-2 Nsp1 antibody (PA5-116941) was purchased from Thermo Fisher Scientific. The β-actin antibody (GTX109639) was purchased from Gentex. Secondary antibodies were purchased from LI-COR Bioscience. GC376 Sodium was purchased from Aobious (AOB36447). Remdesivir was purchased from MedChemExpress (HY-104077).
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5

SARS-CoV-2 Virus Infection Assay

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MA104 cells and Vero E6 cells were seeded in 96-well plates and used when reached close to 100% confluency. Harvested supernatants from infected cells were serial diluted and inoculated onto prepared 96-well plates with MA104 cells or Vero E6 cells. After 1 h incubation at 37°C, the inoculum was removed and replaced with fresh media and the plate was incubated at 37°C overnight for 16–18 h. Cells infected with VSV-SARS-CoV-2 was directly taken under the microscope and examined for GFP. Cells infected with replication-competent SARS-CoV-2 WA1 was fixed with 4% PFA for 15 min, washed twice with PBS, and permeabilized with 0.1% Triton-X100 in PBS for 10 min. After two washes with PBS with 0.1% Tween-20 (PBST), the cells were blocked for 1 h at room temperature using 1%BSA with 10%FBS in PBST. Cells were incubated at 4°C overnight with SARS-CoV-2 nucleocapsid antibody (Sino Biological, 40588-T62) in PBST +1% BSA, diluted at 1:1,000. Post primary antibody incubation, cells were washed twice in PBST and incubated for 45 min in dark with anti-rabbit IgG HRP-linked antibody (Cell Signalling, 7074S) in PBST +1% BSA, diluted at 1:1,000. Finally, the cells were incubated with AEC substrate (Vector Laboratories, SK-4200) for antigen labeling.
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