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12 protocols using db fatwax ui

1

Quantifying Palmitic Acid in Murine Samples

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Gas chromatography–mass spectrometry (GC/MS), using an Agilent 7890B/7000D (Agilent Technologies, Santa Clara, CA, USA), was performed for measurement of the concentration of palmitic acid in murine sera, liver, feces, and plantaris muscle. Fecal pellets were collected by resection of the distal colon during sacrifice. A total of 25 milliliters of sera and 15 µg of the liver, feces, and plantaris muscle were methylated using a fatty acid methylation kit (Nacalai Tesque, Kyoto, Japan). The final product was loaded onto a Varian capillary column (DB-FATWAX UI; Agilent Technologies). For fatty acid separation, the capillary column used was CP-Sil 88 for FAME (length, 100 mm; inner diameter, 0.25 mm; membrane thickness, 0.20 μm; Agilent Technologies). The column temperature was held at 100 °C for 4 min, gradually increased to 240 °C at 3 °C/min, and maintained for 7 min. Samples were injected in split mode at a ratio of 5:1. Palmitic acid methyl ester was detected in the selective ion monitoring mode. All results were normalized to the peak height of the C17:0 internal standard [36 (link)].
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2

Fatty acid profiling in ApoE mice

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The fatty acid compositions present in the aorta and sera of ApoEKO and ApoEST2DKO mice were quantified utilizing gas chromatography–mass spectrometry (GC-MS), employing an Agilent 7890B/7000D instrument (Agilent Technologies, Santa Clara, CA, USA). A total of 10 mg of aortic tissue and 50 μL of serum were subjected to methylation using a fatty acid methylation kit (Nacalai Tesque Inc., Kyoto, Japan). The resultant product was then introduced onto a Varian capillary column (DB-FATWAX UI, Agilent Technologies, Santa Clara, CA, USA).
For fatty acid separation, the CP-Sil 88 FAME capillary column was employed (with dimensions of 100 m × an inner diameter of 0.25 mm × membrane thickness of 0.20 μm; Agilent Technologies). The temperature of the column was initially set at 100 °C for a duration of 4 min, followed by a gradual increase of 3 °C per minute until reaching 240 °C, where it was maintained for 7 min. Sample injection was performed in split mode with a split ratio of 5:1. Each fatty acid methyl ester was then detected in the selected ion-monitoring mode. All obtained results were subsequently standardized against the peak height of the C17:0 internal standard [23 (link)].
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3

Quantifying Liver and Serum Fatty Acids

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Using gas chromatography-mass spectrometry (GC/MS), Agilient 7890B/5977B (Agilient Technologies, Santa Clara, CA, USA), liver and serum palmitic acid compositions were measured. Briefly, fifteen μg of liver and 25 μL of serum were methylated with a fatty acid methylation kit (nacalai tesque, Kyoto, Japan), and products were added to a Varian capillary column (DB-FATWAX UI; Agilent Technologies). Using CP-Sil 88 for FAME (100 m × an inner diameter of 0.25 mm × membrane thickness of 0.20 μm, Agilent Technologies) separation of fatty acid was performed; during this operation, the column temperature was maintained at 100°C for 4 min and then increased step by step by 3°C/min to 240°C and held there for 7 min. Then, the sample was shoot with split ratio 5:1 in split mode and each fatty acid methyl ester was observed in selected ion monitoring mode. Normalization was performed with the peak height of the C17:0 internal standard.
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4

Fatty Acid Analysis in Diabetic Mice

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The composition of fatty acids in the soleus muscle tissue, sera, and liver tissue of db/m mice, db/m mice with SGLT2i, db/db mice, and db/db mice with SGLT2i was measured using gas chromatography–mass spectrometry (GC–MS) with an Agilent 7890B/7000D instrument (Agilent Technologies, Santa Clara, CA, USA). Fifteen milligrams of liver tissue and 25 μL of sera were methylated using a fatty acid methylation kit (Nacalai Tesque, Kyoto, Japan). If the sample weight was less than 15 mg, the concentration was calculated by dividing by the weight. The final product was loaded onto a Varian capillary column (DB‐FATWAX UI; Agilent Technologies). The CP‐Sil 88 for FAME capillary column was used for fatty acid separation (100 m × an inner diameter of 0.25 mm × membrane thickness of 0.20 μm; Agilent Technologies). The column temperature was maintained at 100°C for 4 min and then increased gradually by 3°C/min to 240°C and held for 7 min. The sample was injected in split mode with a split ratio of 5:1. Each fatty acid methyl ester was detected in the selected ion monitoring mode. All results were normalized to the peak height of the C17:0 internal standard.15
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5

Murine Adipose Fatty Acid Analysis

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The composition of fatty acids in murine epididymal adipose tissue and serum was measured by gas chromatography–mass spectrometry (GC/MS), Agilent 7890B/5977B (Agilent Technologies, Santa Clara, CA, USA). A total of 15 µg of epididymal adipose tissue and 25 µl of serum were methylated with a fatty acid methylation kit (nacalai tesque, Kyoto, Japan). The final product was loaded onto a Varian capillary column (DB-FATWAX UI; Agilent Technologies). The capillary column used for fatty acid separation was CP-Sil 88 for FAME (100 m × an inner diameter of 0.25 mm × membrane thickness of 0.20 μm, Agilent Technologies). The column temperature was maintained at 100°C for 4 min and then increased gradually by 3°C/min to 240°C and held there for 7 min. The sample was injected in split mode with split ratio 5:1. Each fatty acid methyl ester was detected in selected ion monitoring mode. All results were normalized to the peak height of the C17:0 internal standard (24 (link)).
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6

Quantification of Muscle Fatty Acids

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The soleus muscle composition of free fatty acids was determined by using the same gas chromatography-mass spectrometry (GC/MS) system as that used for SCFA and amino acid quantification. and an Agilent 7890B/7000D (Agilent Technologies, Santa Clara, CA, USA). Soleus muscle (15 µg) was methylated with a fatty acid methylation kit (Nacalai Tesque, Kyoto, Japan). The final product was loaded onto a Varian capillary column (DB-FATWAX UI; Agilent Technologies). The capillary column used was CP-Sil 88 for FAME (length, 100 mm; membrane thickness, 0.20 μm; inner diameter, 0.25 mm; Agilent Technologies) for fatty acid separation. The column temperature was maintained at 100 °C for four minutes, increased gradually at a rate of 3 °C/min to 240 °C, and maintained for seven minutes. The samples were injected in the split mode at a ratio of 5:1. The fatty acid methyl esters were detected in the selected ion monitoring mode. Each result was normalized to the peak height of the C17:0 internal standard.
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7

Murine Liver and Serum Fatty Acids

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The fatty acid composition of the murine liver and serum samples was analyzed using gas chromatography-mass spectrometry on an Agilent 7890B/5977B System (Agilent Technologies, Santa Clara, CA, USA). Liver tissue (15 µg) and serum (25 µL) samples were methylated using a Fatty Acid Methylation Kit (Nacalai Tesque, Kyoto, Japan). The final product was loaded onto a Varian capillary column (DB-FATWAX UI; Agilent Technologies). The capillary column used for fatty acid separation was CP-Sil 88 for FAME (100 m × an inner diameter of 0.25 mm × membrane thickness of 0.20 μm, Agilent Technologies). The column temperature was maintained at 100°C for 4 min, increased gradually by 3°C/min to 240°C, and then held there for 7 min. The sample was injected in split mode with a split ratio of 5:1. Each fatty acid methyl ester was detected in the select ion-monitoring mode. All results were normalized to the peak height of the C17:0 internal standard (14 (link)).
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8

Quantifying Fatty Acids in Murine Samples

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Collected samples were stored at 30°C until being used in experiments. Serum ( 25μL ) obtained via cardiac puncture during euthanasia, feces from the small intestine ( 15μg ), and liver tissue ( 15μg ) samples were used for measuring free fatty acids. A fatty acid methylation kit (Nacalai Tesque) was used to analyze the methylation of samples. Gas chromatography–mass spectrometry (GC-MS) was performed using an Agilent 7890B/7000D system (Agilent Technologies) to measure palmitic acid levels in murine sera, feces, and liver tissues ( n=10 ). The final product was loaded onto a Varian capillary column (DB-FATWAX UI; Agilent Technologies). The capillary column used for fatty acid separation was CP-Sil 88 for FAME [ 100m×0.25mm
(inner diameter)×0.20μm (membrane thickness); Agilent Technologies]. The column was maintained at 100°C for 4 min, and the temperature was then increased gradually by 3°C/min to 240°C and held for 7 min. The sample was injected in split mode with a split ratio of 5:1. Each fatty acid methyl ester was detected in the selected ion-monitoring mode. All the results were normalized to the peak height for the C17:0 internal standard.55 (link)
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9

SCFA and Lactic Acid Quantification

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Basal culture media and CFSs were assessed for SCFAs content after a liquid–liquid extraction method with methyl tert-butyl ether (MTBE). SCFAs were then analyzed using a gas chromatography-mass spectrometer GC-TOFMS (BT, Leco Corp., St. Josef, MI, USA), as previously described24 (link). Briefly, the column adopted was a 30 m DB-FATWAX-UI (Agilent Technologies, Santa Clara, CA), while high-purity helium (99,9999%) was used as the carrier gas. One μL of each sample was injected in splitless mode at 250 °C. The program was as follows: the initial temperature was 40 °C for 2 min, then ramped 7 °C/min up to 165 °C, 25 °C/min up to 240 °C, and maintained for 5 min. The electron impact ionization was applied at 70 eV. The ion source temperature was set at 250 °C, the mass range at 40 to 300 m/z with an extraction frequency of 32 kHz and an acquisition rate of 200 spectra/s.
The lactic acid content was measured by using the Megazyme Lactic Acid Assay Kit (NEOGEN Europe Ltd), following the manufacturer’s instructions.
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10

Fatty Acid Profiling of Extracted Oils

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In order to determine the fatty acid profile of the extracted oil, a trans-esterification for converting fatty acids to fatty acid methyl esters (FAME) was carried out using the methylation reagent trimethylsulfonium hydroxide (TMSH). For this, between 0.02 g and 0.03 g of the extracted oil was weighed into a flask and filled up to 1 mL with hexane. Aliquots of 100 µL of this solution were pipetted into a GC vial, adding 50 µL of TMSH and subsequently 50 µL of ethyl acetate. The sample was then mixed and allowed to equilibrate for 30 min before proceeding with the GC analysis. A total of 1μL of each sample solution was injected into the GC System, an Agilent 7890B equipped with a DB-FATWAX UI (Agilent Technologies Inc. G3903-63008) column (30 m × 0.25 mm × 0.25 μm). Fatty acids were eluted under a programme with a starting temperature of 100 °C, heating at 15 °C min−1 to 200 °C (held for 50 min), followed by a second heating step at 50 °C min−1 to 240 °C (held for 10 min), a flow rate of 1.2 mL/min (32 cm/s), injector temperature of 240 °C, and FID-detector temperature set to 245 °C. The extraction was conducted from two biological replicates, each in technical duplicates.
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