The largest database of trusted experimental protocols

105 protocols using sircol collagen assay kit

1

Collagen Quantification in Cell Cultures

Check if the same lab product or an alternative is used in the 5 most similar protocols
Collagen concentration was assessed on day 7 using the Sircol™ Collagen Assay Kit (Biocolor, Antrim, UK). For collagen isolation, 2 mL of 0.1 mg/mL pepsin in 0.5 M acetic acid was added to the cultivated media. Pepsin digestion was performed overnight at 4 °C with constant agitation of the medium. To concentrate the collagen sample, 100 μL of acid-neutralizing reagent was added to 1 mL of the samples and cell debris was removed by centrifugation. As a blank control, 100 μL of cold isolation and concentration reagent was added to all samples, incubated overnight at 4 °C, and centrifuged at 13,000×g for 10 min, after which the supernatant was discarded. One milliliter of Sircol dye reagent was added to the samples and incubated at room temperature for 30 min with constant agitation. After centrifugation, the supernatant was discarded, the pellet of each sample was dissolved in 1 mL of alkali reagent, and the absorbance was measured at 550 nm.
+ Open protocol
+ Expand
2

Measuring Tumor Solid Stress Using Collagen Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
The tumor collagen content was measured using Sircol Collagen Assay Kit (Biocolor, UK) according to the manufacturer's instructions. PDX mice with tumors that reached a size of ≈1 cm in diameter were selected for solid stress measurement. The protocol of grouping and drug administration was the same as described above. 24 h after the last injection, the tumor tissues were harvested, washed with Hank's buffer, and measured using a caliper. Solid stress was measured using the tumor opening technique.[30] The tumor was cut along its longest axis (≈80% of its shortest diameter) and then soaked in Hank's buffer for 10 min to diminish any transient, poroelastic responses. Next, the width of the opening at the surface of the tumor at the middle of the cut was measured. Finally, the width of the opening was divided by the diameter perpendicular to the cut to calculate the solid stress.
+ Open protocol
+ Expand
3

Quantifying Intestinal Collagen Content

Check if the same lab product or an alternative is used in the 5 most similar protocols
Intestinal collagen content was evaluated using the Sircol Collagen Assay Kit (Biocolor, Carrickfergus, UK). The colonic specimens obtained from of all mice were homogenized in 0.5 M acetic acid containing 1% pepsin. The resulting mixture was stirred over night at 4°C. The total soluble collagen content of the mixture was determined. The acid-soluble type-I collagen supplied with the kit was used to generate a standard curve [15 (link)].
+ Open protocol
+ Expand
4

Evaluating Triptolide's Impact on CAF ECM

Check if the same lab product or an alternative is used in the 5 most similar protocols
To evaluate the effects of triptolide on ECM secretion of CAFs, we measured concentration of total collagens, fibronectin (FN), periostin, hyaluronic acid (HA), matrix metallopeptidase 2 (MMP2), and MMP9 in CM derived from CAFs. Enzyme-linked immuno sorbent assay (ELISA) was used to quantify FN (BioVision, CA, USA), periostin (Thermo Scientific), HA (TSZELISA, MA, USA), MMP2 (Abcam), and MMP9 (Abcam). Total collagen was quantified by Sircol collagen assay kit (Biocolor Life Science Assays, County Antrim, UK). Meanwhile, autocrine signaling of TGF-Beta 1 (Abcam) and TGF-Beta 2 (R&D Systems, MN, USA) were determined by ELISA in CM. All the experiments were performed according to the manufacturer’s protocol.
+ Open protocol
+ Expand
5

Collagen Quantification from Tissue Samples

Check if the same lab product or an alternative is used in the 5 most similar protocols
Dried tissue and dECM samples (3–5 mg) were separately weighted. Tissue samples were washed with PBS at least 2–3 times to remove excess blood and centrifuged. All samples were digested overnight at 4 °C in 1.5 mL of 0.1 mg/mL pepsin solution prepared in 0.5 M acetic acid. Collagen in the extract was quantified with the Sircol collagen assay kit (Biocolor) according to the manufacturer’s instructions.
+ Open protocol
+ Expand
6

Quantifying Collagen in UV-Exposed HaCaT Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
The collagen content in HaCaT cells after UVB irradiation was quantified using a SirCol collagen assay kit (Biocolor Ltd., Belfast, Northern Ireland). Anionic Sirus red dye, which reacts specifically with basic side chain groups of collagen, was added to cell lysates and then incubated under gentle rotation for 30 min at room temperature. After centrifugation at 12,000 × g for 10 min, collagen-bound dye was dissolved with 0.5 mM NaOH, and the absorbance was measured at 540 nm. Collagen content was expressed as a percentage of the non-UV-irradiated control.
+ Open protocol
+ Expand
7

Quantifying Collagen Secretion in SFs

Check if the same lab product or an alternative is used in the 5 most similar protocols
The soluble collagen types (I–V) were determined using a Sircol Collagen Assay Kit according to the instructions of the manufacturer (Biocolor), as previously described (34 (link)). Briefly, primary SFs were transferred to a 6-well plate (Corning Incorporated, New York, USA) and cultured in complete DMEM for 72 h at 37°C. Medium was removed and cells were cultured in low-serum DMEM for 24 h at 37°C. During stimulation, SFs were cultured in low-serum DMEM in the presence of 10% isolated NET structures for 48 h at 37°C. Culture supernatant was collected and centrifuged at 20 × g for 5 min. Contained collagen was measured after overnight treatment with the manufacturer's isolation and concentration reagent. In this set of studies, collagen production was measured in culture supernatants after 48 h of stimulation, based on optimization experiments.
+ Open protocol
+ Expand
8

Quantification of Skin Collagen and Gene Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
The collagen content of the skin was determined by Sircol Collagen Assay kit (Biocolor, Newtown Abbey, UK).[21 (link)] Total protein assay (Bio-Rad Laboratories, Hercules, CA) was used as control to normalize collagen content of each sample.
Tissue mRNA levels were determined by real-time quantitative PCR (RT-PCR). Total RNA was isolated from skin frozen in RNA Later (Qiagen Sciences, Maryland, MA) and purified with RNA mini kit (Qiagen Sciences, Maryland, MA). Real-time PCR was performed using validated TaqMan Gene Expression Assays for Cdh11, Col1α1, alpha-smooth muscle actin (αSMA), CCN2 (formerly called connective tissue growth factor), fibronectin, TGF-β1, IL-6, and 18s RNA (Applied Biosystems). The 18s RNA gene was used as a control to normalize transcript levels of mRNA in each sample. Data are presented as fold change.
+ Open protocol
+ Expand
9

Sircol Collagen Assay for PQ Exposure

Check if the same lab product or an alternative is used in the 5 most similar protocols
To detect the secretion of collagen from the cells into the medium, extracellular levels of collagen were assessed by a method based on Sircol dye-binding to collagen using a kit (Sircol Collagen Assay Kit, Biocolor, Belfast, Northern Ireland). During exposure to 30 μM PQ for 12 days, soluble collagen levels in the conditioned medium (10–12 days with or without PQ exposure) were determined.
+ Open protocol
+ Expand
10

Quantifying Inflammatory Cytokines and Lung Collagen

Check if the same lab product or an alternative is used in the 5 most similar protocols
Enzyme-linked immunosorbent assay (ELISA) kits for IL-1β, IL-4, IL-6, IL-10, IL-12, IL-13, monocyte chemotactic protein (MCP)-1, tumor necrosis factor (TNF)-α, interferon (IFN)-γ, and ovalbumin (OVA)-specific immunoglobulin E (IgE) were purchased from Invitrogen (Waltham, MA, USA). For measuring the level of total lung collagen, the Sircol Collagen Assay kit (Biocolor Ltd., Belfast, Northern Ireland) was used. NIST® SRM® 2975 (National Institute of Standard and Technology Standard Reference Material) was purchased from Sigma-Aldrich (St. Louis, MO, USA). All kits for ELISA and total lung collagen level measurement were used according to the protocol provided by the supplier. All chemicals used were of the highest commercially available quality.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!