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Versa doc model 1000

Manufactured by Bio-Rad
Sourced in United States

The Versa Doc Model 1000 is a compact and versatile imaging system designed for a range of applications in life science research and analysis. It is capable of capturing high-quality images of various sample types, including gels, blots, and chemiluminescent samples. The system utilizes a high-resolution CCD camera and advanced imaging software to provide accurate and reliable results.

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7 protocols using versa doc model 1000

1

Phosphorylation of Pyk2 in Glioma Cells

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Glioma cells were seeded (1X105) in 60mm dishes and incubated in normal conditions 24 hours prior experiments. The cells were then treated for 2 hours with medium conditioned from glioma/microglia co-culturing (AMCM). Control glioma cells were treated with medium conditioned from microglia or glioma cells alone (MCM or GCM respectively). After 2 hours cells were lysed and clarified cell lysates were separated on 10% SDS-PAGE gels. The proteins were transferred to a PVDF membrane and probed with rabbit polyclonal anti-phospho-Pyk2(Tyr 579/580) primary antibody (Invitrogen; #44636G), dilution 1:1000, followed by anti-rabbit conjugated immunoglobulins (Sigma). Final detection was performed with enhanced chemiluminescence methodology (SuperSignal West Dura Extended Duration Substrate; Pierce, Rockford, IL) and the intensity of the signal was measured using a gel documentation system (Versa Doc Model 1000, Bio Rad). In all cases, intensity of the chemiluminescence signal was corrected for minor changes in protein content after densitometry analysis of the India ink stained membrane.
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2

Western Blot Analysis of Cell Signaling

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Cell lysates (20 µg), separated by 10% SDS‒PAGE, were transferred to PVDF membranes and probed with anti-phospho-Pyk2 (Tyr 579/580) (#44636G, Thermo Fisher Scientific, Invitrogen, MA, USA), anti-Pyk2, anti-phospho-FAK (Tyr 925), anti-FAK, anti-BCL2 and anti-Cyclin D1 (#3480, #3284, #3285, #3498, #55506 Cell Signaling, Danvers, MA, USA) antibodies.
Detection was performed with enhanced chemiluminescence (#34075, SuperSignal West Dura Extended Duration Substrate; Pierce, Rockford, IL, USA). The signal intensity was measured using a gel documentation system (Versa Doc Model 1000, Bio-Rad, Hercules, CA, USA). Research Resource Identifiers for cells and antibodies are presented in Online Recourse 1.
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3

Western Blot Analysis of AKAP150 in Astrocytes

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Astrocytes were pelleted and resuspended in lysis buffer (pH 7.5) containing: (in mM) Tris-HCl 20, NaCl 150, EDTA 1.0, EGTA 1.0, PMSF 1.0, 1% Triton X-100, and an additional mixture of peptide inhibitors (leupeptin, bestatin, pepstatin, and aprotinin). Total protein of homogenates were determined with the Bradford protein assay (Bio-Rad), followed by addition of an appropriate volume of Urea sample buffer (62mM Tris/HCl pH 6.8, 4% SDS, 8M Urea, 20mM EDTA, 5% β-Mercaptoethanol, 0.015% Bromophenol Blue) to load 15 μg of protein per lane. Next, samples were boiled in a water bath at 95 °C for 10 minutes, spun to pellet debris, and immediately run on 7% SDS-polyacrylamide gels. Western blotting was performed as previously described (Kucheryavykh et al., 2009 ) using rabbit polyclonal antibodies against AKAP150 (1:200; Santa Cruz Biotechnology, Dallas, TX, USA; Cat# sc-10765, RRID:AB_2289482). Final detection was performed with enhanced chemiluminescence methodology (SuperSignal® West Dura Extended Duration Substrate; Pierce, Rockford, IL, USA) as described by the manufacturer, and the intensity of the signal was measured in a gel documentation system (Versa Doc Model 1000, Bio Rad, Hercules, CA, USA). In all cases, intensity of the chemiluminescence signal was corrected for minor differences in protein content after densitometry analysis of the India ink stained membrane.
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4

Western Blot Analysis of Glycolytic Enzymes

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Clarified cell lysates separated on 10% SDS-PAGE gels were transferred to PVDF membranes and probed with mouse anti-ENO2 antibody (Santa Cruz Biotechnology, Dallas, TX, USA; #SC-21738) and rabbit polyclonal anti-PKM2, anti-GAPDH and anti-HXK antibodies (Cell Signaling, Danvers, MA, USA; #4053, #5174 and #2024, respectively), diluted 1:1000, followed by the secondary antibodies (Sigma-Aldrich, Saint Louis, MO, USA; #A9169). Detection was performed with enhanced chemiluminescence methodology (SuperSignal® West Dura Extended Duration Substrate; Pierce, Rockford, IL, USA) and the intensity of the signal was measured using a gel documentation system (Versa Doc Model 1000, Bio Rad). The intensity of the chemiluminescent signal was corrected for minor changes in protein content after densitometry analysis of the India ink-stained membrane.
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5

Western Blot Analysis of Immune Markers

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Clarified cell lysates separated by 10% SDS-PAGE were transferred to PVDF membranes and probed with an anti-arginase 1 (Arg1) antibody, developed in mice (cat. #SC-21738, Santa Cruz Biotechnology, Dallas, TX, USA), anti-CD86 (cat. #ab53004, Abcam, Boston, MA, USA), and anti-Iba1 (cat. #016-20001, Wako Chemicals USA Inc., Richmond, VA, USA), developed in rabbits, diluted 1:1000, and followed by addition of the corresponding secondary antibodies (cat. #A9169, Sigma-Aldrich, Saint Louis, MO, USA). Detection was performed with enhanced chemiluminescence methodology (cat. #34075, SuperSignal® West Dura Extended Duration Substrate; Pierce, Rockford, IL, USA), and the intensity of the signal was measured using a gel documentation system (Versa Doc Model 1000, Bio-Rad, Hercules, CA, USA). β-tubulin (cat. #86298S, Cell Signaling, Danvers, MA, USA) immunoreactive signal was used as the loading control.
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6

Proteomic analysis of bleached coral

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The images of the stained gels were taken, in a Bio-Rad Versa Doc Model 1000 imaging system at 200 dpi resolution. All images were analyzed for spot detection and matching with Bio-Rad PD-Quest™ software, version 7.4.0. The software calculated individual spot “volumes” by density/area integration; then, to eliminate gel-to-gel variation, individual spot volumes for each gel were normalized relative to the total spot volume of that gel. Normalized spot volume data from each experimental set were exported to Microsoft Excel, where differences in expression of spots between the unbleached and bleached coral groups were analyzed using analysis of variance (ANOVA), with P<0.05 as the criterion for statistical significance. Protein spots determined to be significantly different in abundance ≥ 2 fold between the two cell lysates bleached and unbleached acropora palmata were calculated in corresponding fold number by PD Quest software. These significantly differentially expressed 2D spots were selected and marked for excision. All experiments were performed in biological and technical triplicates.
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7

Western Blot Analysis of Cell Signaling

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Cell lysates (20 μg), separated by 10% SDS–PAGE, were transferred to PVDF membranes and probed with anti-phospho-Pyk2 (Tyr 579/580) (#44636G, Thermo Fisher Scientific, Invitrogen, MA, USA), anti-Pyk2, anti-phospho-FAK (Tyr 925), anti-FAK, and anti-Cyclin D1 (#3480, #3284, #3285, #55506 Cell Signaling, Danvers, MA, USA) antibodies, followed by the addition of the corresponding secondary antibodies (cat. #A9169, Sigma–Aldrich, St. Louis, MO, USA). Detection was performed with enhanced chemiluminescence substrate (#34075, SuperSignal West Dura Extended Duration Substrate; Pierce, Rockford, IL, USA). The signal intensity was measured using a gel documentation system (Versa Doc Model 1000, Bio-Rad, Hercules, CA, USA).
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