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13 protocols using as605240

1

Inflammatory Cell Count in PI3Kγ Mice

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Inflammatory cell numbers were assessed in the broncoalveolar fluid (BALF) of PI3KγWT mice and of PI3KγWT/βENaC-Tg, PI3KγKO, and PI3KγKO/βENaC-Tg mice. Briefly, mice from each genotype were sacrificed and BALF was then collected by lavaging lungs in situ with 3 × 1-mL volumes of PBS. After centrifugation of the BALFs, cell pellets, in 500 μL of RPMI medium, were deposited onto glass slides using a Cytospin Cytocentrifuge. Slides were then stained using the Diff-Quick system (MICROPTIC S.L., Spain) and a differential cell count was performed as previously described [19 (link)]. In addition, BALF inflammatory cells were also analyzed in mice treated with the PI3Kγ inhibitor AS-605240 [5-(quinoxalin-6-ylmethylidene)-1,3-thiazolidine-2,4-dione] (Sigma, Germany). PI3KγWT and PI3KγWT/βENaC-Tg mice were treated once daily for 3 days with the AS-605240 by intraperitoneal injection of 10 mg/kg of the drug or vehicle (0.5% carboxymethyl cellulose, 0.25% Tween) alone.
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2

Investigating Cellular Signaling Pathways

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Forskolin, platelet activating factor (PAF), GDP, AlC13, NaF, and AS605240 (PI3Kγ inhibitor) were from Sigma. CCL21 and CXCL12 were from R&D Systems. Idelalisib (PI3Kδ inhibitor) was from SelleckChem.
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3

Inhibition of PI3K Signaling Pathways

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The pan-PI3K inhibitor LY294002 (10 µM), PI3Kγ inhibitor AS605240 (3 µM), PI3Kδ inhibitor IC87114 (3 µM), cycloheximide (1 µ/mL), thapsigargin (100 nM) and phospholipase C (PLC) inhibitor U-73122 (2 µM) were purchased from Sigma. Jasplakinolide (500 nM) was purchased from Tocris Bioscience. U-73122 was added 10 min prior to stimulation (fMLP), Jasplakinolide 5 min prior to stimulation and thapsigargin immediately prior to stimulation. PI3K inhibitors were added to cells either at the beginning of the normoxic/hypoxic incubation or 10 min before fMLP stimulation. cycloheximide and ethylene glycol tetraacetic acid (EGTA) (2 mM) were also present from the outset of the normoxic/hypoxic incubation.
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4

PI3Kγ Inhibitor Ameliorates ECM

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The potential pharmacological role of PI3Kγ blockage in the development of ECM was assessed in infected C57BL/6 mice using ATP-competitive PI3Kγ inhibitor, AS605240 (Sigma-Aldrich, St. Louis, USA) [13 (link), 15 (link)–17 (link)]. The drug was administered orally (30 mg/kg) and daily from day 3 until day 6 p.i. (a time point when infected WT mice showed neurological symptoms of ECM). AS605240 was suspended in 0.1% methylcellulose solution and control animals received drug vehicle.
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5

Chemical Screen for Zebrafish Stem Cell

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The ICCB Known Bioactive Library was purchased from BIOMOL (Enzo Life Sciences) and used for the adult zebrafish transplantation-based chemical screen. Chemicals were diluted at a 1:200 ratio. Chemicals used for the secondary round of screening for confirmation were from a different aliquot of the library, independent of the primary screen plate. 11,12-EET (Cayman Chemical, Cat. 50511) was resuspended in DMSO with original organic solvent evaporated. AS605240 (Sigma-Aldrich Cat. A0233) was resuspended in DMSO. The following chemicals were used for zebrafish marrow treatment: dmPGE2 (Cayman, Cat. 14750), 10 μM; BIO (EMD), 0.5 μM. 0.5 μM 11,12-EET and 14,15-EET were used for zebrafish WKM treatment (Fig. 1e); 2 μM 11,12-EET for all mouse WBM treatment (Fig. 4); 5 μM 11,12-EET for all zebrafish embryo treatment (Fig. 2, 3). The concentrations were chosen based on dose titration pilot experiments with doses spanning 0.1–50 μM. For the chemical suppressor screen, the suppressors were added 30 min prior to 11,12-EET. Zebrafish embryos were incubated with inhibitors at three different concentrations. The highest effective concentrations tested without causing general toxicity are listed in Supplementary Table S1.
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6

Diabetic Oxidative Stress Assay

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AS605240 (5-quinoxalin-6-ylmethylene-thiazolidine-2,4-dione (98 % pure, Figure 1A(Fig. 1)), glutathione (GSH), STZ, 5,5´-Dithiobis-2-nitrobenzoic acid (DTNB), 2-thiobarbituric acid (TBA), bovine serum albumin (BSA), and phosphate buffered saline (PBS), were purchased from Sigma (St. Louis, USA). Antibodies for Western blotting (WB) and immunohistochemistry were procured from Invitrogen, Camarillo, CA, USA. All the drug solutions were freshly prepared before administration.
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7

Isolating and Characterizing Murine Pulmonary Endothelial Cells

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Primary murine pulmonary endothelial cells (PMECs) were isolated as we have described previously16 (link). PMEC were re-suspended in diluted ECGM (1:3 in DMEM/F12) and plated on 15 mg/mL reduced-growth factor extracellular matrix (Cultrex, Trevigen, USA) at a density of 1.75 × 105 cells/cm2. Tubule formation was determined by measuring branch number and length using NIH Image J software, 2, 4 and 6 h after treatment with CNP (1 nM to 1 μM, GenScript, USA) or VEGF (30 ng/mL, Pre-protech, USA).
Tubule formation in HUVEC was measured following treatment with CNP (1 nM) or ANP (10 nM) in the absence or presence of selective NPR-C antagonist M372049 (10 μM), the selective PI3Kγ inhibitor AS605240 (100 nM; Sigma), or the selective PKG blocker KT5283 (2 μM; Sigma) over a 16 h period. A cohort of cells was transfected using lipofectamine 2000 (Thermofisher Scientific) with either non-specific siRNA (Mission Control, Sigma Aldrich), NPR-B- or NPR-C- specific siRNA (Sigma Aldrich) and were treated with CNP or the selective NPR-C agonist, cANF4 (link)–23 (link) (2 nM). Silencing of NPR-B and NPR-C was confirmed at the mRNA and protein level using RT-PCR and immunoblot (Supplemental Figure 1A-C).
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8

Pharmacological Inhibition of Signaling Pathways

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TGX221 was obtained from Chemdea; NSC23766 and IC87114 from Selleck Chemicals; GDC0941 from MedChemexpress; KIN193 from Haoyuan Chemexpress; NVP-BYL719, NVSPI35, AS605240 and IC87114 were synthesized by Chemitek (Indianapolis, USA). Mice were dosed once by intraperitoneal injection of KIN193 (20 mg kg−1) formulated in 7.5% NMP (Sigma-Aldrich), 40% polyethylene glycol 400 (Sigma-Aldrich) and 52.5% dH2O; once by intraperitoneal injection of NSC23766 (2.5 mg kg−1), or gavaged once daily with NVP-BYL719 (45 mg kg−1) in 0.5% methylcellulose; AS605240 (50 mg kg−1) in 0.5% carboxymethylcellulose/0.25% Tween-20; or IC87114 (45 mg kg−1) dissolved in 75% polyethylene glycol.
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9

PI3K Inhibitor Reconstitution and Storage

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IC-87114 (PI3Kδ inhibitor) was obtained from Selleckchem (Houston, TX; S1268) and reconstituted to maximal solubility of 2.52 mmol/L in DMSO, and aliquots were stored at −80°C. AS-605240 (PI3Kγ inhibitor) was obtained from Sigma-Aldrich (Natick, MA; A0233) and reconstituted to 9.7 mmol/L in DMSO, and aliquots were stored at −80°C. The following inhibitors were obtained from Novartis (Cambridge, MA): BKM-120 (pan PI3K), BYL-719 (PI3Kα inhibitor), and MEK-162 (MEK inhibitor). These were reconstituted in DMSO 10 mmol/L, and aliquots were stored at −20°C.
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10

Chemical Screen for Zebrafish Stem Cell

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The ICCB Known Bioactive Library was purchased from BIOMOL (Enzo Life Sciences) and used for the adult zebrafish transplantation-based chemical screen. Chemicals were diluted at a 1:200 ratio. Chemicals used for the secondary round of screening for confirmation were from a different aliquot of the library, independent of the primary screen plate. 11,12-EET (Cayman Chemical, Cat. 50511) was resuspended in DMSO with original organic solvent evaporated. AS605240 (Sigma-Aldrich Cat. A0233) was resuspended in DMSO. The following chemicals were used for zebrafish marrow treatment: dmPGE2 (Cayman, Cat. 14750), 10 μM; BIO (EMD), 0.5 μM. 0.5 μM 11,12-EET and 14,15-EET were used for zebrafish WKM treatment (Fig. 1e); 2 μM 11,12-EET for all mouse WBM treatment (Fig. 4); 5 μM 11,12-EET for all zebrafish embryo treatment (Fig. 2, 3). The concentrations were chosen based on dose titration pilot experiments with doses spanning 0.1–50 μM. For the chemical suppressor screen, the suppressors were added 30 min prior to 11,12-EET. Zebrafish embryos were incubated with inhibitors at three different concentrations. The highest effective concentrations tested without causing general toxicity are listed in Supplementary Table S1.
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