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8 protocols using lsrfortessa hts flow cytometer

1

Flow Cytometry Analysis of Erythrocytes and GMVs

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For erythrocytes, 4–8 million cells were added per 200 µL per round-bottom sample tube and either treated first with membrane-perturbing enzymes (as described above) or with BODIPY-labeled MUS:OT 2:1 amph-AuNPs at 0.07, 0.14, or 0.28 mg/mL for 1 hr. Tubes were rotated continuously at a desired incubation temperature. Samples from tubes were transferred to 96-well round-bottom plates (BD) or polystyrene flow cytometry tubes (BD Falcon) for analysis. Samples were analyzed with a LSR Fortessa HTS flow cytometer (BD) and data were analyzed using FlowJo software.
For GMVs, flow cytometry samples were prepared in 96-well round-bottom plates (BD) or polystyrene flow cytometry tubes (BD Falcon). We first prepared solutions of 50 mM sucrose in water with BODIPY-MUS:OT 2:1 amph-AuNPs at 0.07 mg/mL in sample wells. GMV harvests in sucrose were mixed 1–2x with a pipette and added at a 1:1.5 ratio per sample well. Samples were rocked gently back and forth after preparation – but there was no additional mixing of GMVs with AuNPs in the wells. Samples were incubated at 1–3 hr and 22°C, unless otherwise noted. Samples were then analyzed with a LSR Fortessa HTS flow cytometer (BD) and data were analyzed using FlowJo software.
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2

T-cell Activation and Cytokine Profiling

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Purified anti-CD3 and anti-CD28 (BD Pharmingen) were diluted to a concentration of 5 μg/mL in PBS and coated onto 96-well EIA/RIA plates. Unfractionated splenocytes were resuspended in complete media (CM), consisting of RPMI 1640 (VWR) supplemented with 5% FBS, 100 U/mL penicillin, 100 µg/mL streptomycin, 2 mM L-glutamine, and 0.05 mM β-mercaptoethanol. The cell suspension was applied to antibody-coated plates at a seeding density of 2 × 105 cells per well. Cultures were harvested after incubating at 37 oC for 24 h. For each sample, culture supernatants were pooled from three replicate wells. Cytokine levels in supernatants were assayed by flow cytometry using the BD Cytometric Bead Array (CBA) Mouse Th1/Th2/Th17 Cytokine Kit according to the manufacturer’s instructions. Samples were run on a BD LSRFortessa HTS flow cytometer and analyzed using BD FACSDiva software.
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3

Multiparametric Flow Cytometry of PBMCs

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PBMCs were stimulated for 8 hours in the presence of 1x brefeldin A (eBioscience) as described earlier. Cells were washed and stained with viability dye (Live/Dead Aqua, Life Technologies), followed by staining of extracellular surface markers with fluorescently conjugated antibodies specific for CD14, CD4, CD8, CD19, and CD56 (BD Biosciences). After washing, the cells were fixed and permeabilized with the Foxp3 / Transcription Factor Staining Buffer Set (eBioscience) according to the manufacturer’s recommendations. Intracellular staining was subsequently performed for IL-2, IFN-γ, and TNF-α with specific antibodies (all from BD Biosciences). Cells were washed again and immediately analyzed on a BD LSR Fortessa HTS flow cytometer. Data were then analyzed with FlowJo v7.6.5 or vX software (Tree Star).
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4

Skin Cell Isolation and Immunophenotyping

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Wound edge skin at specific time points was collected and full-thickness skin samples were minced with surgical scissors and incubated for 30 min in dispase I solution (Roche, Basel, Switzerland) (2.4 μg/mL) at 37 °C. This was followed by incubation at 37 °C for 3 h with 2 mg/ml Collagenase D (Roche) at 37 °C under constant agitation. Obtained single-cell suspensions were washed with IMEM (Gibco-Thermo Fisher Scientific) supplemented with 10% heat-inactivated FBS, 2 mM L-glutamine, 0.15% sodium hydrogencarbonate, 1 mM sodium pyruvate, nonessential amino acids, and 50 μg/ml gentamycin. Single-cell suspensions were incubated with combinations of fluorophore-conjugated antibodies against the following surface markers: CD45-APCCy7 (30-F11), CD3e-BV711(17A2), F4/80-PE (BM8), CD11b-PE Dazzle 594 (M1/70), Ly6C-PerCP (HK1.4), Ly6G-BUV395 (1A8) in Hank’s buffered salt solution (HBSS) for 30 min at 4 °C and then washed. LIVE/DEAD Fixable Violet Dead Cell Stain Kit (Invitrogen Life Technologies) was used to exclude dead cells. Cells were then fixed for 30 min at 4 °C using BD Cytofix/Cytoperm (Becton Dickinson) and washed twice. All antibodies were purchased from Biolegend and BD Biosciences. Cell acquisition was performed on a BD LSR-Fortessa–HTS flow cytometer using FACSDiVa software (BD Biosciences) and data were analyzed using FlowJo software (TreeStar).
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5

Quantifying Immune Cell Chimerism

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For calculation of chimerism efficiency, 150 ul of blood was collected from uninjured CD45.1>CD45.2 or lysMtdTom>Cx3cr1GFP mice through the tail vein and mixed with heparinized HBSS (1 IU/100 μl). Immune cells from blood were enriched with Ficoll-Paque (GE Healthcare) according to manufacturer’s instructions. Cell suspensions were Fc blocked with anti-mouse CD16/32 (Biolegend, 1:200) for 10 min on ice and subsequently incubated for 30 min at 4°C with anti-CD45.1-PE/Cy7 (Biolegend 110729, 1:500), anti-CD11b-Brilliant Violet 650 (Biolegend 101239, 1:500) and anti-CD45.2-Pacific Blue (Biolegend 109819, 1:500). Cell suspensions were analyzed using BD LSR Fortessa-HTS flow cytometer and data were quantified using FACS-Diva software (BD Biosciences).
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6

ZIKV Infection Apoptosis Assay

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LN-229 and LN-229 AXLKO cells (1 × 105) were infected with ZIKV at MOI 0.01, 0.1, 1, and 5 PFU/cell. At 72 hpi the cells were stained for Annexin V (FITC Annexin V Apoptosis Detection Kit II, BD Biosciences) and propidium iodide following the manufacturer's protocol. Flow-cytometry analysis was immediately performed on a BD LSR Fortessa HTS flow cytometer collecting 10,000 events per run. Data analysis was then carried out using FlowJo software.
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7

Intracellular Viral Antigen Quantification

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Flow cytometry was used to determine the percentage of cells infected. For this analysis, cells were detached with trypsin-EDTA at indicated time points to remove cell surface bound viral particles and then washed with stain buffer (BD Biosciences, 554657). Cells were first stained with viability dye, eFluor 780 (Thermo Fisher, 65-0865-14) for 20 min at 4°C and then fixed with fixation solution (BD Biosciences, 51-2090KZ) for 20 min at 4°C. Intracellular viral antigens were stained under permeabilized condition (BD Biosciences, 554714) with primary flavivirus envelope protein monoclonal antibody 4G2 (Millipore, MAB10216) followed by a secondary staining with a phycoerythrin-conjugated goat anti-mouse IgG antibody (Jackson ImmunoResearch) in 1× buffer. Acquisition was performed on an LSR Fortessa HTS flow cytometer with FACSDiva software (BD Biosciences), and data were analyzed using FlowJo v.10 software.
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8

Bortezomib-Induced Protein Aggregation

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Protein aggregates in CLB-Ga and CLB-Sedp cell lines treated for 24 h with 10 µM or 10 nM bortezomib were analyzed using the proteostat detection kit (ENZ-51035-K100) according to the manufacturer’s intructions. Briefly, after treatment, cells were harvested and washed in PBS. Cells were then fixed in 4% PFA for 30 min at room temperature. Cells were then washed in PBS and permeabilized using 0.5% Triton in PBS for 30 min on ice. Cells were washed in PBS and incubated for 30 min with the Aggresome Red Detection Reagent (1:10,000). Cell fluorescence was analyzed using the LSR Fortessa HTS flow cytometer (BD Biosciences).
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