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175 protocols using fura 2 am

1

Quantifying Cytosolic Calcium Dynamics

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The cytosolic Ca2+ response was evaluated using the fluorescent Ca2+ indicator Fura-2/AM (Life Technologies). Cells were grown on 24-mm coverslips and incubated at 37°C for 30 min in 1 mM Ca2+/KRB supplemented with 2.5 mM Fura-2/AM, 0.02% Pluronic F-68 (Sigma), 0.1 mM Sulfinpyrazone (Sigma). The cells were then washed and supplied with 1 mM Ca2+/KRB. To determine the Ca2+ cytosolic response, the cells were placed in an open Leyden chamber on a 37°C thermo-controlled stage and exposed to 340/380 wavelength light using the Olympus Xcellence multiple wavelength high-resolution fluorescence microscopy system equipped with a UAPON 40 × 0340-2 objective, numerical aperture 1.35 (Olympus). The fluorescence data were expressed as emission ratios. Fluorescence was measured every 100 ms, and the [Ca2+]i was calculated by the ratio method using the equation: [Ca2+]c 1/4 Kd (R–Rmin)/(R–Rmax) Sf2/Sf1.
To measure the thapsigargin-releasable Ca2+ levels, cells grown on 24-mm coverslips were incubated for 30 min in 1 mM Ca2+-free medium/KRB supplemented with 2.5 mM Fura-2/AM, 0.02% Pluronic F-68 (Sigma), 0.1 mM Sulfinpyrazone (Sigma) and EGTA 100 μM. The fluorescence was measured every 100 ms. After 2 min., thapsigargin 100 nM was added to the cells, and the amount of Ca2+ released was estimated by normalization of the 340/380 ratio.
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2

Calcium Imaging of Intestinal Organoids

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Petri dishes (30 mm) were coated with BME diluted in Advanced DMEM/F12 (1:100) and left to set at 37 °C for 1 h. Mouse small intestine organoids were collected and washed three times with cold PBS to dissolve BME and re-seeded in BME-coated Petri dishes with ENR medium. After 2 h, organoids were loaded with 7 μM Fura 2-AM (Sigma–Aldrich) in HEPES saline buffer containing 0.01% pluronic F127 (Invitrogen) and 2 mM probenecid (Tocris Bioscience), and incubated for 30 min at 37 °C. Organoids were washed three times with HEPES buffer, and images were recorded with an Axiovert 135 Ca2+ imaging system (Zeiss), at 20× magnification every 80 ms. Cells were excited at 340 nm and 380 nm, and emitted light was acquired at 510 nm. Calcium concentration was calculated by 340/380 fluorescence ratio using MetaFluor software. Adenosine triphosphate (ATP; 100 μM) was used as positive control. Imaging experiments were performed at least three times, and the representative time course is presented in the manuscript.
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3

Characterization of Calcium Signaling Modulators

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General salts, (+)-borneol and (-)-menthol were purchased from Sangon (Shanghai, China). N-(3-Aminopropyl)-2-[(3-methylphenyl)methoxy]-N-(2-thienylmethyl)benzamide hydrochloride (AMTB) was purchased from Santa Cruz Biotechnology (Dallas, USA). N-(4-tert-butylphenyl)-4-(3-chloropyridin-2-yl)piperazine-1-carboxamide (BCTC) and Fura-2/AM were purchased from Sigma-Aldrich (Shanghai, China).
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4

Calcium signaling pathway assays

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Fura-2 AM, thapsigargin and all other common chemicals were obtained from Sigma-Aldrich. YM 244769, CGP 37157, N-[2-[[3-(4-Bromophenyl)-2-propenyl]amino]ethyl]-5-isoquinolinesulfonamide dihydrochloride (H89), Calphostin C, Phorbol 12-myristate 13-acetate (PMA), (9R,10S,12S)-2,3,9,10,11,12-Hexahydro-10-hydroxy-9-methyl-1-oxo-9,12-epoxy-1H-diindolo[1,2,3-fg:3′,2′,1′-kl]pyrrolo[3,4-i][1,6]benzodiazocine-10-carboxylic acid, hexyl ester (KT5720) were obtained from Tocris Bioscience. Ru360 was obtained from EMD Millipore. TSP4 proteins were expressed and purified according to our previous report (Kim et al., 2012 (link)).
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5

Fura-2 Calcium Imaging of HEK293T and DRG Cells

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HEK293T and DRG cells were loaded with 100 nM Fura-2 AM (Sigma) for 40 minutes before washing with extracellular fluid (in mM: NaCl 150, KCl 5, MgCl2 2, CaCl2 2, HEPES 10, glucose 10; pH 7.4). Coverslips were mounted on a Nikon Eclipse TE300 microscope with an optiMOS Scientific CMOS Camera (Teledyne QImaging, Birmingham, United Kingdom), and images acquired with Winfluor (Version 3.7.3; University of Strathclyde, Glasgow, United Kingdom) every 2 seconds with excitation at 355 and 380 nm and emission recorded at 510 nm. Control buffer and drugs were perfused via a 6-way gravity flow system (∼600 μL/minute). The outflow was placed ∼100 to 200 μm from the group of cells from which the recordings were made. Recordings were performed at 37°C, except where the effect of heat stimulation was assessed when the temperature of the superfusate was increased from 32 to 55°C linearly. The temperature of the superfusate was continuously measured at the opening of the superfusing tube and recorded alongside measuring fluorescent intensities.
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6

Cerebral Cortex Calcium Imaging

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The method described previously (Chan et al., 1996 (link)) was used in present study. Briefly, cerebral cortex was digested with 0.25% trypsin (Sigma, USA) at 37°C for 20 min. The reaction was terminated with DMEM containing 10% FBS (Hyclon, USA). Samples were filtered through a cell strainer, and centrifuged at 1,000 rpm for 5 min. The precipitated cells were resuspended in D-Hank's solution and adjusted to 1 × 106 cells/ml. They were loaded with 5 μM fura-2 AM (Sigma, USA) at 37°Cfor 30 min in the dark, washed twice with D-Hank's solution, and incubated at 37°C for 5 min in the dark. Concentrations of intracellular free Ca2+ [Ca2+]i were determined by using fluorospectrophotometer (Hitachi F-4500, Japan). The following equation was used for calculation:
[Ca2+]i = Kd × [(R–Rmin)/(Rmax–R)] × (Sf380/Sb380), where Kd is the dissociation constant of the dye (224 nM was used); R is the ratio at excitation wavelengths 340/380 nm; Rmin is the ratio at zero [Ca2+]i, and Rmax is the ratio at saturated [Ca2+]i. Rmax was obtained by adding 0.2% Triton X-100 to make cell membrane permeable to Ca2+, allowing the extracellular and intracellular free Ca2+ to equilibrate. Thereafter, Rmin was determined by adding chelator to erase all extracellular and intracellular free Ca2+. Results were expressed as nmol/L (106 cells/ml).
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7

Measuring Neuronal Calcium Dynamics

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Monitoring of cytosolic calcium transients in individual neurons was carried out using the membrane permeable fluorescent indicator Fura 2-AM (Sigma-Aldrich) in combination with the Till Vision Imaging System (T.I.L.L. Photonics, Gräfelfing, Germany) coupled to an upright microscope (Axioskop 2 FS plus, Zeiss). Emitted fluorescence was collected by a charge-coupled device (CCD) camera. Cultured cells were incubated for 30 minutes at 37°C with Fura 2-AM in a standard bath solution containing 140 mM NaCl, 5 mM KCl, 2 mM CaCl2, 10 mM glucose and 10 mM HEPES, adjusted to pH 7.4 with NaOH.
The intracellular Ca2+ was imaged by exciting Fura 2-AM at 340 and 380 nm with its emission monitored in intervals of 300 ms at 510 nm. Recordings were terminated by a 50 mM KCl stimulation to ensure the viability of the recorded cells. After background subtraction, the 340/380 nm excitation ratio for Fura 2-AM was calculated, which increases as a function of the cytosolic free Ca2+ concentration ([Ca2+]i). To determine [Ca2+]i a calibration measurement in the presence of 5 μM ionomycin or with a 10 mM EGTA solution free of Ca2+ was conducted. [Ca2+]i was calculated according to [Ca2+]i = β × KD(R ‒ Rmin)/(Rmax ‒ R) [55 (link)] with β = F380,max/F380,min = 3.6, KD = 245 nM, Rmin = 0.38 and Rmax = 1.6.
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8

Intracellular Ca2+ dynamics in PASMCs

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The fluorescent dye Fura 2-AM (Sigma-Aldrich, Munich, Germany) was used for detection of changes in intracellular Ca2+ concentration ([Ca2+]i) in PASMCs (passage 0) isolated from WT and Cox4i2−/− mice. Hypoxia was induced by application of hypoxic (1% O2, balanced with N2) HEPES buffer at minute 2. All gas concentrations in % are given for normobaric conditions.
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9

FURA2 AM-based Calcium Imaging

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Cells were plated on a 24-well plate at the density of 4 × 104. After treatment, the cells were washed with 1 mL of serum-free medium and loaded with 20 µM FURA2 AM; (Sigma-Aldrich, USA) in the presence of 0.5% pluronate (Sigma-Aldrich, USA) and 0.1 nM ionomycine in serum-free medium for 40 min at 37 °C in the dark. The cells were then washed three times with a 500 µL of PBS. Fluorescence was measured on the fluorescence scanner Synergy II (BioTek, Germany) at λex 340/380 nm and λem 516 nm. The results were calculated as the ratio between 340 and 380 nm and expressed as relative fluorescence units (RFU).
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10

Cellular Oxidative Stress Measurement

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FURA-2AM (FURA-2-pentakis (acetoxymethyl) ester), PBS (Phosphate-Buffered Saline), Triton X-100, EGTA (ethylene glycol-bis (β-aminoethyl ether), sodium elenite (Na2SeO4), selenium methionine, hydrogen peroxide (H2O2), sodium chloride (NaCl), potassium chloride (KCl), magnesium chloride (MgCl2), glucose, Hepes, and dimethyl sulfoxide (DMSO), were acquired from Sigma-Aldrich (St. Louis, MO, USA). Any other chemicals and reagents (reagent grade) were of the highest quality, and obtained from reputable commercial sources.
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