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5 protocols using safranin o

1

In Vitro and In Vivo Differentiation of iPSC-NCCs

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We induced in vitro differentiation into adipocytes, chondrocytes, and osteocytes as previously reported (Lee et al., 2010 (link)). Differentiated cells were stained by Toluidine blue (Wako Pure Chemical Industries), Safranin-O (Wako Pure Chemical Industries), and Alizarin red (Wako Pure Chemical Industries). We also differentiated them into myofibroblast (SMA+) and peripheral neurons (peripherin+) and performed an immunocytochemical analysis. In vivo differentiation of iPSC-NCCs into chondrocytes: We dissociated Method B iPSC-NCCs at day 10 with Accutase and purified the TRA-1–60-negative fraction using a MACS system (Miltenyi Biotec). We next injected 1.0 × 106 TRA-1–60-negative cells into the testes of 8-week-old NOD-SCID mice, as previously described (Ohta et al., 2011 (link)). Eight weeks after transplantation, the testes were dissected and fixed with 4% PFA in PBS. The paraffin-embedded tissue was sectioned and stained with Toluidine blue (performed by Dept. of Pathology, Keio University School of Medicine). Images were obtained using a BZ-9000 (Keyence, Osaka, Japan) microscope.
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2

Mast Cell Degranulation Assay

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The following materials were commercially obtained from the sources indicated: Dexamethasone, p-nitrophenyl-β-d-2-acetoamide-2-deoxyglucopyranoside, compound 48/80, an anti-dinitrophenyl IgE antibody (clone SPE-7), N-succinyl-Ala-Ala-Pro-Phe-pNA, mitomycin C, substance P, and dinitrophenyl human serum albumin (DNP-HSA) from Sigma-Aldrich (St. Louis, MO, USA), Toluidine blue, Safranin-O, and Evans blue from Wako Pure Chemical Industries (Osaka, Japan), an anti-trinitrophenyl IgE antibody (clone IgE-3) from BD Biosciences (San Diego, CA, USA), trinitrophenyl bovine serum albumin (TNP-BSA) from LSL (Tokyo, Japan), H-d-Ile-Pro-Arg-pNA (S-2288) from Chromogenix (Milano, Italy), N-(4-Methoxyphenylazoformyl)-Phe-OH potassium salt (M-2245) from Bachem AG (Bubendorf, Switzerland), an anti-Gαi2 antibody from Santa Cruz Biotechnology (Dallas, TX, USA), an anti-pan-actin antibody (clone C4), an anti-Gαi1 antibody, an anti-Gαi3 antibody, and thapsigargin from Merck Millipore (Billerica, MA, USA), a horseradish peroxidase (HRP)-conjugated anti-mouse IgG antibody and a HRP-conjugated anti-rabbit IgG antibody from Agilent Technologies (Santa Clara, CA, USA) and recombinant mouse IL-3 from R & D Systems (Minneapolis, MN, USA). All other chemicals were commercial products of reagent grade.
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3

Xylem Cell Staining Protocol

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For xylem cell staining, haustoria were excised from roots, immersed in 10% (w/v) KOH (Wako Chemicals, Osaka, Japan) for 15 min at 90°C, rinsed three times with water, immersed in 0.1% (w/v) Safranin O (Wako Chemicals, Osaka, Japan) solution for 5 min at 90°C, and rinsed three times with water. The stained haustoria were cleared by soaking samples in clearing solution [chloral hydrate (2.5 g ml−1) (Nacalai Tesque), 33% (v/v) glycerol] from 3 hours to overnight before observation. Safranin O–stained xylem cells were observed with a light microscope (Leica DMI3000 B) and an LSM700 laser-scanning confocal microscope (Carl Zeiss) with excitation and emission wavelength suitable for fluorescent images of red fluorescent protein (RFP).
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4

Bone Histology in Murine Cancer Model

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Tibias from mice injected with MC-38 cells for 14 days, 21 days or 28 days were collected. Tibias were fixed in 4% paraformaldehyde (PFA) for 4 days, then the samples were washed and decalcified in a solution of 10% EDTA for 2 weeks and embedded in paraffin. Sections were stained with tartrate resistant acid phosphatase (TRAP) staining (Wako) or Safranin O and fast green staining following manufacturer’s procedures. Briefly, 0.5 mL of TRAP stain solution was added on each section and incubated for 30 min at RT. 0.1 M AMPD-HCl buffer (pH 9.4) was added to soak the sections for 10 min. For Safranin O-Fast Green staining, sections were immersed in 0.1% Safranin O solution for 3 min following by immersed in 0.1% Fast Green solution for 10 s. 1% acetum was utilized for color separation. The images were captured by a fluorescence microscope IX81 (Olympus, Japan).
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5

Chondrogenic Differentiation of MSCs with and without Trisomy 7

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MSCs from six donors with and without trisomy 7 were harvested at P2 in a cell‐dissociation buffer. A total of 2.5 × 105 cells were transferred to a 15‐mL tube (BD Falcon, New Jersey) and cultured in chondrogenic induction medium containing 10 ng/mL transforming growth factor‐β3 (Miltenyi Biotec GmbH, Bergisch Gladbach, Germany) and 1 μg/mL bone morphogenetic protein 2 (Medtronic, Memphis, Tennessee); the medium was changed every 3 to 4 days. After 21 days, chondrogenic differentiated cells were analyzed by staining with safranin O (Fujifilm Wako), and DNA was extracted.22 Chondrogenic ability was evaluated by wet weight, as described previously.23, 24
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