The proteomic analysis of SDS-PAGE protein bands was performed in the proteomics facility of Centro de Investigación del Cáncer, Salamanca, Spain, following its standardized procedures. In brief, selected protein bands were excised from the gels and trypsin-digested proteins were submitted to reversed-phase LC–MS/MS using a nano-UHPLC system (NanoElute, Bruker Daltonics, Germany) coupled to a hybrid trapped ion mobility-quadrupole time-of-flight mass spectrometer Tims TOF Pro (Bruker Daltonics, Germany) via a modified nano-electrospray ion source (Captive Spray, Bruker Daltonics, Germany). Protein identification was done by searching the MS/MS spectra against the Brucella ovis Uniprot proteome database with the Andromeda algorithm (24 (link)) and the MAXQUANT (25 (link)). Protein relative abundance was compared using the iBAQ score (26 (link)).
Protein marker 6
Protein Marker VI is a pre-stained protein standard used for estimating the molecular weights of proteins in SDS-polyacrylamide gel electrophoresis (SDS-PAGE) applications. It contains a mixture of proteins with known molecular weights, allowing for the determination of the approximate size of proteins in a sample.
Lab products found in correlation
5 protocols using protein marker 6
Proteomic Profiling of Brucella ovis
The proteomic analysis of SDS-PAGE protein bands was performed in the proteomics facility of Centro de Investigación del Cáncer, Salamanca, Spain, following its standardized procedures. In brief, selected protein bands were excised from the gels and trypsin-digested proteins were submitted to reversed-phase LC–MS/MS using a nano-UHPLC system (NanoElute, Bruker Daltonics, Germany) coupled to a hybrid trapped ion mobility-quadrupole time-of-flight mass spectrometer Tims TOF Pro (Bruker Daltonics, Germany) via a modified nano-electrospray ion source (Captive Spray, Bruker Daltonics, Germany). Protein identification was done by searching the MS/MS spectra against the Brucella ovis Uniprot proteome database with the Andromeda algorithm (24 (link)) and the MAXQUANT (25 (link)). Protein relative abundance was compared using the iBAQ score (26 (link)).
Immunoblotting Protocol for Protein Analysis
Gel-based separation and imaging of ABPs
SDS-PAGE Protein Separation Protocol
Western Blot Analysis of SLC9C1 in Sea Urchin
About PubCompare
Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.
We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.
However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.
Ready to get started?
Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required
Revolutionizing how scientists
search and build protocols!