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1

Cell Proliferation Assays for Cancer Research

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Cell counting kit-8 (CCK-8) assay was used to assess cell proliferation. Cells were attached to 96-well plate at indicated times and cell viability was measured by adding CCK8 reagents (Dalian Meilun Biology Technology Co., Ltd.) with incubation for 2 h. The OD450 value of each sample was quantified using a spectrophotometer. Cell proliferation was also evaluated by a colony formation assay. MDA-MB-231 cells were plated at a low density (2×103 cells/well) in 6-well plate, and culture media with 30% serum (Every Green; Zhejiang Tianhang Biotechnology Co., Ltd. was replaced every 3 days. Following 2 weeks of incubation, 4% paraformaldehyde (Dalian Meilun Biology Technology Co., Ltd.), was used to fix the cells at room temperature for 30 min. After staining with 0.1% crystal violet (Servicebio) for 15 min at room temperature, excess crystal violet was washed away with PBS, and the plaques were imaged and analyzed using the ImageJ software (version 1.54f; National Institutes of Health).
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2

Cell Culture Protocol: MDA-MB-231 and 293T

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MDA-MB-231 and 293T cells were obtained from the American Type Culture Collection. Cells were cultured in Dulbecco's Modified Eagle Medium (DMEM; Gibco; Thermo Fisher Scientific, Inc.) supplemented with 10% FBS (Every Green; Zhejiang Tianhang Biotechnology Co., Ltd.) and 1% penicillin/streptomycin (Dalian Meilun Biology Technology Co., Ltd.), and incubated at 37°C and 5% CO2 in a humidified equipment.
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3

Vitamin C and D Modulate Inflammatory Bowel Disease

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Human colon cancer SW480 cells were obtained from Shanxi Provincial Cancer Hospital. The SW480 cells were cultured in Dulbecco’s Modified Eagle Medium containing 10% (v/v) heat-inactivated fetal bovine serum (EVERY GREEN, Zhejiang Tianhang Biotechnology Co., Ltd., Zhejiang, China), penicillin (100  U/mL), and streptomycin (100 μg/mL) (BOSTER, Wuhan, China) in a humidified atmosphere of 5% CO2 and 95% air at 37 °C. SW480 cells were seeded at 104 cells per well. After 24 h, except for the control group, lipopolysaccharide (LPS; 100 ng/mL) was added to the cells followed by incubation for 24 h to establish an in vitro model of inflammatory bowel disease. Cell proliferation was quantified using the Cell Counting Kit-8 (BOSTER).
The following cell groups were used: control group (without intervention); LPS group (100 ng/mL LPS); VD3 group (0.1 μmol/L VD3); VC + VD3 group (0.1, 1, 5, 10 μmol/ml VC + 0.1 μmol/L VD3).
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4

Interaction of Mesangial Cells and Umbilical Cord MSCs

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The mouse umbilical cord mesenchymal stem cell line mUC-MSC (BNCC340370) and mouse mesangial cell line SV40-MES-13 (ATCCCRL-1927) were purchased from BeNa Culture Collection (BeNa Chuanglian Biotechnology Research Institute, Beijing, China) and American Type Culture Collection (Manassas, VA 20108, USA), respectively. Both cell lines were cultured in DMEM medium (HyClone, Thermo Fisher Scientific, Logan, Utah, USA) supplemented with 10% FBS (EVERY GREEN, Zhejiang Tianhang Biotechnology Co. Ltd., Zhejiang, China), 100 U/mL penicillin, and 100 μg/mL streptomycin (Beijing Solarbio Science & Technology Co., Ltd., Beijing, China) in a humidified atmosphere of 5% CO2 at 37°C.
Some of the SV40-MES-13 cells were placed in 6-well plates and cultured with normal glucose (NG, 5.6 mM) or high glucose (HG, 30 mM) for 24 hours. Meanwhile, the other SV40-MES-13 cells were seeded in the transwell chamber and then placed on a 6-well plate that contained mUC-MSCs. After coculturing for 24 hours, the SV40-MES-13 cells were harvested for further analyses.
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5

Detailed Culturing Protocols for Renal Cell Carcinoma Cell Lines

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The RCC cell lines, ACHN (PU MC0 0 0334), Ca k i-1 (PU MC0 0 024 4), A498 (PUMC0 0 0171), OSRC2 (PUMC0 0 0292), 769-P (PUMC000333) and 786-O (PUMC000243), and 293T (PUMC000010) cells were purchased from the National Infrastructure of Cell Line Resource (Beijing, China). SN12-PM6 cell line was kindly provided by Dr X.P. Zhang from Union Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China. The 293T and SN12-PM6 cell lines were cultured in Dulbecco's modified Eagle's medium; the ACHN and A498 cells were maintained in minimum essential medium; the OSRC2, 769-P and 786-O cells were maintained in Roswell Park Memorial Institute-1640 medium; and the Caki-1 cells were maintained in McCoy's 5A medium. All media (Thermo Fisher Scientific, Inc.) were supplemented with 10% fetal bovine serum (FBS) (EVERY GREEN, Zhejiang Tianhang Biotechnology Co., Ltd.) and 1% penicillin G sodium/streptomycin. And all cell lines were grown in a humidified 37°C incubator containing 5% CO2.
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6

Gene Silencing in LUAD Cell Lines

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Two RAS‐driven LUAD cell lines (A549 and NCI‐H1299) were purchased from the Chinese Academy of Science Cell Bank (https://www.cellbank.org.cn/). The cell lines were authenticated by short tandem repeat (STR) profiling before use. Cells were cultured in the DMEM (High Glucose), supplemented with 10% fetal calf serum (Every Green, Zhejiang Tianhang Biotechnology), as well as penicillin/streptomycin/amphotericin B (Beyotime Biotechnology). Cells were cultured in a humidified atmosphere of 95% air and 5% CO2 at 37°C.
They were transfected by lentivirus containing green fluorescent protein (GFP), and untransfected cells were filtered out by flow cytometry. Then GFP‐included cells were transfected with siRNAs at a 100 nM final concentration using the Lipofectamine8000 (Beyotime) and the Opti‐MEM (Thermo Fisher Scientific). siRNAs were designed by and purchased from the Guangzhou RiboBio Co, China. We used two different siRNAs separately targeting each gene (IRX2, SPINK13, and CAPN8) and two different siRNAs without targeting the human genome as controls. The targeting sequences of each siRNA can be accessed in the Table S2. The efficiency was assessed using quantitative real‐time polymerase chain reaction (qRT‐PCR) and western blot analysis after transfection. Primers used can be obtained in the Table S3.
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7

Oxidative Stress Responses in SHSY5Y Cells

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SHSY5Y cells were obtained from ATCC (ATCCCRL-2266) and grown in DMEM/F12 medium (hyclone) supplemented with 10% FBS (EVERY GREEN, Zhejiang Tianhang Biotechnology Co., Ltd, China), 100 μg/mL streptomycin, and 100 U/ml penicillin (Beijing solarbio science & technology co., Ltd) in high humidity condition with 5% CO2 at 37°C. After culturing the cells in 100 mm dishes to reach a ~70% confluence, they were subjected to hydralazine, H2O2 or MPP+ treatment. The dose and duration of application of hydralazine, H2O2 or MPP+ are provided in the figures and text. SiRNA interference were performed by treating the cells with Nrf2 SiRNA (sc-37030) or control SiRNA (sc-37007) (Santa Cruz Biotechnology, Santa Cruz, CA) in 6-well plates for 24 h using the Lipofectamine 3000 reagent (Thermo Fisher Scientific Co., Carlsbad, CA, USA) as indicated in the instructions provided by the manufacturer. After transfection for approximately 24 h, SHSY5Y cells were exposed to hydralazine with or without MPP+. After these treatments, cells were used for biochemical analysis.
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8

Isolation and Culture of Murine BMSCs

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MC3T3-E1 cells (MC3T3-E1 Subclone 14) and C3H/10T1/2 (Clone 8) were purchased from the National Collection of Authenticated Cell Cultures (Shanghai, China) and maintained in α-MEM supplemented with 100 U/mL penicillin–streptomycin (Beyotime) and 10% fetal bovine serum (FBS, Every Green, ZheJiang TianHang Biotechnology Co., Ltd., Hangzhou, China). Bone marrow stromal cells (BMSCs) were harvested and cultured as reported [37 (link)]. Briefly, long bones were first separated from C57BL/6J mice aged 2–3 months. Then, small cuts were made at both the proximal and distal ends of the bones, and a syringe was used to flush the cells. The cells were collected, centrifuged, and suspended in α-MEM with 10% FBS and 1% penicillin–streptomycin, then plated in cell culture dishes (1.0 × 106 cells/cm2) for 72 h. The cell culture medium that contained the suspended cells was removed, and the adherent BMSCs were used for further analysis.
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9

Cultivation and Manipulation of Orf Virus

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ORFV-GS14 preserved in our laboratory (an ORFV isolated from Gansu Province, China, designated as GS14) was used as a parent virus throughout the experiment and as a genetic background virus to generate target gene-deleted virus. Virus stocks were propagated in Primary Goat Testicular cells (PGT cells) and stored at −80 °C. The wild-type virus was prepared by sampling scabs from the goat and grinding them after the challenge experiment [3 (link)]. The cbp/gif double-gene deletion mutant (rGS14ΔCBPΔGIF) of ORFV was constructed in our laboratory [3 (link)]. The EGFP-N1 and other plasmids were kindly donated by the China Institute of Veterinary Drug Control. The PGT cells were prepared and frozen in our laboratory [3 (link),27 (link)]. Sheep testis cells were cultured in Ham’s DMEM/12 Gluta MAX medium (Thermo Fisher Scientific, USA) containing 10% fetal bovine serum (FBS) (Every Green, Zhejiang Tianhang Biotechnology Co., PGTd, Hangzhou, China) and 1% penicillin-streptomycin solution (with a final concentration of 100 IU/mL of penicillin and 100 µg/mL of streptomycin) at 37 °C with 5% CO2.
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