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7 protocols using qpcr 2x premix sybr

1

Quantifying Inflammatory Cytokine Expression

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Total RNA was extracted from dorsal skin using TRIzol (Invitrogen, CA, USA). First-strand cDNA synthesis from the total RNA template was performed with PrimeScriptTM RT master mix (Takara, Tokyo, Japan). The resulting cDNA was subjected to real-time PCR using qPCR 2x PreMIX SYBR (Enzynomics, Seoul, Korea) and a CFX-96 thermocycler (Bio-Rad, Hercules, CA, USA). PCR conditions used to amplify all genes were as follows: 10 min at 95 °C and 40 cycles of 95 °C for 15 s and 60 °C for 30 s. Expression data were calculated from the cycle threshold (Ct) value using the ΔCt method of quantification. GAPDH was used for normalization. Oligonucleotides used for real-time PCR are as follows: murine GAPDH, forward, 5′-AGG TCG GTG TGA ACG GAT TTG-3′, reverse, 5′-AGG TTT GAT TCA GGC AGA TGT T-3′; murine TNF-α, forward, 5′-GAT TAT GGC TCA GGG TCC AAC TCT-3′, reverse, 5′-GGA CAT TCG AGG CTC CAG TGA ATT-3′; murine IL-4; forward, 5′-GGT CTC AAC CCC CAG CTA GT-3′, reverse, 5′-GCC GAT GAT CTC TCT CAA GTG AT-3′; murine IL-6, forward, 5′-TAG TCC TTC CTA CCC CAA TTT CC-3′, reverse, 5′-TTG GTC CTT AGC CAC TCC TTC-3′; murine IL-13, forward, 5′-CCT GGC TCT TGC TTG CCT T-3′, reverse, 5′-GGT CTT GTG TGA TGT TGC TCA-3′; murine IFN-γ, forward, 5′-ATG AAC GCT ACA CAC TGC ATC-3′, reverse, 5′-CCA TCC TTT TGC CAG TTC CTC-3′.
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2

Quantitative Analysis of Cramp Gene Expression

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Total RNA was extracted from the cells using TRI reagent (Molecular Research Center, Cincinnati, OH, USA). RNA was reverse-transcribed using oligo dT primer and reverse transcriptase (Promega, Madison, WI, USA; A3800) according to the manufacturer’s instructions. Quantitative PCR was performed using qPCR 2X PreMIX SYBR (Enzynomics, Daejeon, Korea; RT500) on a 7500 Real Time PCR System (Applied Biosystems, Foster City, CA, USA). Data were calculated using the 2−ΔΔCt method. The values were normalized to β-actin levels. Primers were synthesized according to our previous report [15 (link)]. The Cramp primer sequences used were as follows: 5′-CTACCTGAGCAATGTGCCTTC-3′ and 5-CAGGCCTACTACTCTGGCTGA-3′.
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3

Gene Expression Analysis in Skin Lesions

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At the end of the experiment days, the test animals were sacrificed; the lesion skin area was collected. Total RNA was extracted using TRIzol reagent (Invitrogen, Carlsbad, CA, USA). Synthesis of the first complementary DNA (cDNA) strand of the entire RNA template was performed using a Prime ScriptTM RT Master Mix (Takara, Tokyo, Japan). The cDNA obtained was subjected to real-time PCR using qPCR 2X PreMIX SYBR (Enzynomics, Seoul, South Korea) and a CFX-96 thermocycler (Bio-Rad, Hercules, CA, USA). The PCR conditions used to amplify all genes were as follows: 30 cycles at 95°C for 10 min, 95°C for 10 s, 60°C for 15 s (IFN-γ, 53°C; IL-2, 54°C), and 72°C for 20 s. Expression data were calculated as cycle threshold (Ct) values using ΔCt through a quantification method. GAPDH was used for normalization. The oligonucleotides used are listed in Table 1.
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4

Quantitative Real-Time PCR Analysis of Gene Expression

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Total RNA was extracted from HaCaT keratinocytes or mouse skin using Tri-RNA Reagent (Favorgen, Ping-Tung, Taiwan). First-strand cDNA synthesis was performed with PrimeScript RT master mix (Takara, Shiga, Japan). The resulting cDNAs were subjected to real-time PCR using qPCR 2x Premix SYBR (Enzynomics, Daejeon, Korea) with a Stratagene Mx3000p qPCR machine (Agilent Technologies, CA, USA). PCR conditions used to amplify all genes were 10 min at 95 °C and 40 cycles of 95 °C for 15 s and 64 °C for 40 s. Expression data were calculated from the cycle threshold (Ct) value using the ΔCt method for quantification. RPLP0 was used for normalization. Oligonucleotides are listed in Supplementary Table S1.
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5

Quantitative Real-Time PCR Analysis

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The total RNA was quantified by NanoDrop spectrophotometer (NanoDrop Technologies LLC, Wessington, South Dakota, USA). The laboPassconversion kit (CosmoGENETECH, Seoul, South Korea) was used to synthesize the complementary DNA (cDNA). The resulting cDNA was subjected to real-time PCR using qPCR 2x PreMIX SYBR (Enzynomics, Seoul, Korea) and a CFX-96 thermocycler (Bio-Rad, Hercules, CA, USA). PCR conditions used to amplify genes were as follows: 10 min at 95°C and 40 cycles of 95°C for 10s, 60°C for 15s, and 72°C for 20s. Expression data were calculated from the cycle threshold value using the ΔCt method for quantification. Oligonucleotides used for real-time PCR were described in S1 Table.
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6

Gene Expression Analysis by qPCR

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Total RNA was extracted using the TRIzol reagent (Invitrogen, USA). cDNA synthesis was performed using Prime Script TM RT Master Mix (Takara, Japan). Quantitative PCR was performed using qPCR 2X PreMIX SYBR (Enzynomics, Korea) on a CFX96 Touch Real-Time PCR Detection System (Bio-Rad). Gene expression levels were calculated and reported as cycle threshold (Ct) values using the ΔCt quantification method. Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) was used for normalization. The primers used for qPCR are summarized in Table 1.
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7

Quantitative Analysis of Gene Expression

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Total RNA was extracted from HaCaT keratinocytes and mouse skin using RNAiso Plus (Takara). First-strand cDNA synthesis from the total RNA template was performed with PrimeScriptTM RT master mix (Takara). The resulting cDNAs were subjected to real-time PCR using qPCR 2x PreMIX SYBR (Enzynomics) with a Stratagen Mx3000p (Agilent Technologies). PCR conditions used to amplify all genes were 10 min at 95 °C and 40 cycles of 95 °C for 15 s, 60 °C for 40 s. Expression data were calculated from the cycle threshold (Ct) value using the ΔCt method of quantification. GAPDH was used for normalization. Oligonucleotides used for real-time PCR are listed in Supplementary Table S1.
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