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Endofree plasmid purification giga kit

Manufactured by Qiagen
Sourced in United States, Germany

The EndoFree Plasmid Purification Giga Kit is a laboratory equipment product designed for the large-scale isolation and purification of endotoxin-free plasmid DNA. The kit provides a streamlined protocol to efficiently extract and purify high-quality plasmid DNA from bacterial cultures.

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6 protocols using endofree plasmid purification giga kit

1

Large-Scale Plasmid DNA Purification

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Glycerol stocks of the plasmid constructs were thawed and streaked on to LB ampicillin agar plates. After overnight incubation at 37℃, a single colony was transferred with a sterile inoculating loop into 5 mL of LB ampicillin broth and incubated at 37℃ for 6-8 hours. The starter culture was subsequently inoculated into 50 mL of fresh LB ampicillin broth and grown at 37℃ with vigorous shaking (500 rpm) overnight, which was further inoculated into 2.5 L of fresh LB ampicillin broth and incubated under similar conditions. After 16 hours of growth, the bacteria were pelleted by centrifugation at 5,000 rpm at 4℃. The plasmid identity was once again verified by restriction enzyme analysis of a plasmid miniprep made from 1.5 mL of the overnight culture. Large-scale purification of each plasmid was then performed from the bacterial pellets using a commercial kit (EndoFree Plasmid Purification Giga Kit, Qiagen), as per manufacturer instructions. The quality and concentration of the plasmid preparations were evaluated by spectrophotometry and agarose electrophoresis, and the preparations were stored in aliquots at -20℃ till further use.
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2

Endotoxin-free Plasmid Purification

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The bicistronic eukaryotic expression vector pIRES was a gracious gift from Dr Praveen K Gupta, Indian Veterinary Research Institute, Izatnagar, Uttar Pradesh, India. The plasmid pBacPak-GRC9 containing the full-length rabies virus glycoprotein of a street virus isolate (human) was earlier produced in the Department of Neurovirology, National Institute of Mental Health and Neurosciences (NIMHANS), Bangalore, India, as part of another project. EndoFree Plasmid Purification Giga Kit (QIAGEN, Düsseldorf, Germany) was used for the large-scale, endotoxin-free purification of the plasmid construct, as per manufacturer instructions.
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3

Plasmid pUNO1-mFlt3L Purification and CpG ODN Synthesis

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The plasmid pUNO1-mFlt3L (pFL) consists of the pUNO1-mcs vector plus the full-length murine FL cDNA gene (InvivoGen, San Diego, CA, USA). This plasmid was purified using the EndoFree Plasmid purification Giga kit (QIAGEN, Valencia, CA, USA). The Limulus amebocyte lysate assay (BioWhittaker, Walkersville, MD, USA) resulted in <0.1 endotoxin units of LPS per 1 µg of plasmid. A synthetic ODN containing CpG motif 1826 (CpG ODN) (FASMAC Co., Ltd., Kanagawa, Japan) was synthesized artificially.
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4

Plasmid Purification and mIL-28B Expression

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Lyophilized plasmid pUNO1 encoding mouse IL-28B (mIL-28B) was purchased from InvivoGen (San Diego, USA) and prepared on a large scale using an EndoFree® Plasmid Purification Giga Kit (QIAGEN) in accordance with manufacturer's instructions for further in vivo experiments.
To evaluate the expression of the mIL-28B gene in mammalian cells, a monolayer culture of human embryonic kidney 293 (HEK-293) cells was transfected with the mIL-28B plasmid using Attractene Transfection Reagent (QIAGEN). Total RNA was then extracted and complementary DNA (cDNA) was synthesized using a High Pure RNA Isolation Kit (Roche) and a PrimeScriptTM RT Reagent Kit (TaKaRa), respectively, employing the protocols recommended by the manufacturers. Subsequently, the expression of the mIL-28B gene was confirmed by the amplification of mIL-28B cDNA using polymerase chain reaction (PCR) with gene-specific primers.
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5

Eukaryotic Expression Vector Plasmid Protocols

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The bicistronic eukaryotic expression vector pIRES was provided by Dr. Praveen K. Gupta (Indian Veterinary Research institute, Izatnagar, Uttar Pradesh, India). pFLAG-CMV4-hMyd88, containing an 891 bp fragment of human myeloid differentiation factor primary response gene was a kind gift from Dr. Fumihiko Takeshita, Yokohama City University School of Medicine, Japan. The development of pIRES-Rgp encoding the glycoprotein gene of rabies virus has been reported by us earlier [8 (link)]. Large-scale, endotoxin-free plasmid preparations were made using a commercial kit (EndoFree Plasmid Purification Giga Kit, Qiagen, Hilden, Germany).
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6

Plasmid DNA Purification and Quantification

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After preparation, TSA recombinant plasmid DNA was transmuted into E. coli DH5-α, purified by plasmid extraction Kit (Bioneer, Germany), dispersed in sterile deionised distilled water, and kept at -20°C until used. Then, a purification step was followed by using Endo-Free plasmid purification Giga Kit (Qiagen, CA, USA) according to the manufacturer’s instructions. DNA concentration was concluded by taking the dimensions at the Optical Density (OD) of 260 nm. To ensure that the purified DNA was protein-free, the OD260/OD280 ratio was obtained to be 1.80-1.95 [8 (link)].
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