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7 protocols using synaptophysin

1

Protein Expression Analysis in Hypothalamus

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Hypothalamic tissues and cell samples were dissociated in 200 μL of lysis buffer consisting of 1% phenylmethanesulfonyl fluoride (PMSF) (KGP610, KeyGEN, Nanjing, China), and the protein concentration was quantified by a BCA assay kit (Beyotime Biotech Inc., Shanghai, China). The proteins were separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to polyvinylidene fluoride (PVDF) membranes (Roche, Mannheim, Germany). Five percent skim milk in Tris Buffered Saline Tween-20 (TBST) was used to block the membranes for 1 h at room temperature. Following this, the membranes were incubated with the following primary antibodies at 4 °C overnight: PSD95 (1:1000, abcam, Cat# ab12093, Cambridge, UK), Synaptophysin (1:1000, Proteintech, Chicago, IL, USA), FKBP51 (1:1000, Proteintech, Chicago, IL, USA), Lamin B1 (1:1000, Proteintech, Chicago, IL, USA), Progesterone Receptor (1:1000, Bioworld, St. Louis, MO, USA), and Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (1:5000, Proteintech, Chicago, IL, USA). After washing with TBST, the membranes were incubated with appropriate horse radish peroxidase (HRP)-conjugated secondary antibodies for 1 h at room temperature. After being washed in TBST 4 times, protein bands were detected by enhanced chemiluminescence and Image J software (Version 1.43, NIH, Bethesda, MD, USA).
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2

Protein Quantification and Immunoblotting Assay

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Cultured cells were extracted in RIPA buffer (150 mM NaCl, 0.1% SDS, 0.5% sodium deoxycholate, 1X protease inhibitor cocktail (Roche), phosphatase inhibitor cocktail (Pierce), and 50 mM Tris; pH 8.0). Total protein within the lysate was determined according to the BCA™ protein assay kit (Thermo Scientific, Waltham, MA, USA). The detection and dilution factors of the primary antibodies were as follows: vimentin (1:10,000; Abcam, Cambridge, UK), nicotinic acetylcholine receptor α4 (1:10,000; Abcam), muscarinic acetylcholine receptor 2 (1:1000; Abcam), AMPA receptor (1:250; Abcam), NMDA receptor subunit 2A/NMDAR2A (1:1000; Cell Signaling), dopamine receptor subunit D1 (1:5000; Abcam), synapsin 1 (1:2000; Cell Signaling), synaptophysin (1:10,000; Proteintech, Rosemont, IL, USA), postsynaptic density protein 95/PSD95 (1:1500; BD Bioscience, Heidelberg, Germany), acetylcholinesterase/AChE (1:500; Santa Cruz, Dallas, TX, USA), and actin (1:5000; Sigma-Aldrich). The horseradish peroxidase-conjugated secondary antibodies (Invitrogen) were diluted to a ratio of 1:2000–10,000. Immunolabeled proteins were visualized by using an enhanced chemiluminescence kit (Amersham). Images were taken and analyzed by the UVP ChemStudio PLUS Touch system (Analytik Jena).
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3

Antibody-Based Proteomic Analysis of Synaptic Proteins

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Antibodies used in this study included the polyclonal rabbit antibodies against NR2B (#4207, Cell Signaling Technology, Beverly, MA, USA), NR1 (#5704, Cell Signaling Technology), GluA1 (#13185, Cell Signaling Technology), GluA2 (#13607, Cell Signaling Technology), GluA3 (#3437, Cell Signaling Technology), GluA4 (#8070, Cell Signaling Technology), PSD-95 (#3450, Cell Signaling Technology), phospho-Cofilin (#3311, Cell Signaling Technology), Cofilin (#5175, Cell Signaling Technology), Arp3 (#4738, Cell Signaling Technology), NR2A (#05-901R, Millipore, Merck KGaA, Darmstadt, Germany), NR2C (#OPA1-04020, Millipore), NR2D (#PA5-87624, Millipore), AKAP150 (#07-210, Millipore), HMGB1 (#10829-1-AP, Proteintech, Rosemont, IL, USA), Calnexin (#10427-2-AP, Proteintech), Synaptophysin (#17785-1-AP, Proteintech), Iba-1 (#019-19741, Wako Chemicals, Osaka, Japan), and the monoclonal mouse antibodies against NR2A (#MA5-27692, Invitrogen, Carlsbad, CA, USA), NR2B (#MA1-2014, Invitrogen), β-actin (#66009-1-Ig, Proteintech), GAPDH (#60004-1-Ig, Proteintech), Syntaxin (#66437-1-Ig, Proteintech), NeuN (#MAB377, Millipore), RhoA (#ARH04, Cytoskeleton Inc., Denver, CO, USA), Rac1 (#ARC03, Cytoskeleton), Cdc42 (#ACD03, Cytoskeleton), and Rac1-GTP (#26903, Neweast Biosciences, Wuhan, China). Pharmacological agents included glycyrrhizin (#50531, Sigma, St. Louis, MO, USA).
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4

Immunohistochemical Analysis of Brain Slices

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The paraffin sections were dewaxed by immersing them in xylene solution three times, with each immersion lasting 25 min. Subsequently, the sections were immersed in the following sequence: absolute ethanol, 95% ethanol, 85% ethanol, 75% ethanol, and ultrapure water, with each immersion lasting 5 min. The brain slice was then submerged in Trisodium citrate solution at 94 °C for 20 min to facilitate antigen retrieval before allowing the slice to naturally cool to room temperature. The processed brain slices or cell slides fixed with 4% PFA were washed three times with phosphate buffered saline (PBS) and sealed at room temperature for 1 h with 3% BSA containing 3 Triton-X 100. A circle was drawn around the brain slice using a hydrophobic pen before incubation with antibodies (Synapsin-I 1:200, Abclone; Synaptophysin 1:200, Proteintech; BDNF 1:200, Abcam; LPA 1:200, Echelon; ATX 1:200, Abclone) at 4 °C for a minimum of 24 h. After incubation, the slides were washed five times with PBS and incubated with the fluorescent secondary antibody (1:500, Proteintech) at room temperature for 2 h. Following another five washes with PBS, sealing agent was added dropwise (Abcam 104139) to the glass slide for sealing. Finally, images of the brain slices were captured using a fluorescence microscope (Leica-DMi8).
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5

Multiparametric Analysis of Mitochondrial Complexes

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Cultures were plated on glass slides, fixed with 4 % paraformaldehydees, and permeabilized in 0.3 % Triton X-100. The slides were then blocked with bovine serum albumin before being single- or double-probed with antibodies against S100 (#66616-1-Ig, Proteintech), Chromogranin A (#60135-1-Ig, Proteintech), Synaptophysin (#60191-1-Ig, Proteintech), Vimentin (#60330-1-Ig, Proteintech), SDHA (#ab137040, Abcam), SDHB (#ab1471 4, Abcam), SDHC (#sc-515102, Santa Cruz), SDHD (#SAB3500797, Sigma-Aldrich), NDUFA2 (#ab198196, Abcam), NDUFA4 (#ab129752, Abcam), and NDUFA10 (#ab174829, Abcam). Alexa Fluor® 488 Phalloidin (#A12379, Thermo) was used for the staining of F-actin (filamentous actin) cytoskeleton. The sections were nuclear counterstained with 4,6-Diamidino-2-phenylindole (DAPI, #1985274, Thermo). Images (no z-stack) were acquired using a confocal microscope (LSM 880; Carl Zeiss GmbH, Germany).
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6

Antibody-Based Analysis of Synaptic Proteins

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Antibodies to the following targets were used: Synapsin Ⅰ (Cell Signaling Technology, 5297), synaptophysin (Proteintech, 17785–1‐AP), AEP (Cell Signaling Technology, 93627), GFP (Proteintech, 66002–1‐Ig), GST (Proteintech, 66001–2‐Ig), myc (Proteintech, 16286–1‐AP), GAPDH (Proteintech, 60004–1‐Ig), HRP‐conjugated anti‐mouse IgG (BIO‐RAD, 170–6516), HRP‐conjugated anti‐rabbit IgG (BIO‐RAD, 170–6515), Alexa Fluor 594‐conjugated goat anti‐rabbit IgG (Invitrogen, A‐11012), Alexa Fluor 594‐conjugated goat anti‐mouse IgG (Invitrogen, A‐11005), Alexa Fluor 488‐conjugated goat anti‐rabbit IgG (Invitrogen, A11034). Dil (Thermo Fisher Scientific, 1975524), recombinant AEP (Sino Biological, Beijing, China), FD Rapid Golgi Stain Kit (FD Neuro Technologies, Inc, PK401), AEP substrate Z‐Ala‐Ala‐Asn‐AMC (Bachem), ProLongTM gold antifade mountant with DAPI (Invitrogen, P36941).
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7

Western Blot and Immunofluorescence Antibodies

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For western blotting and immunofluorescence assays, all specific antibodies were used between 1 and 10 mg/ml. All antibodies are commercially available: PYCR2 (Sigma, SAB2101919), PYCR1 (Proteintech, 13108-1-AP), PYCR1 (Sigma, SAB2104620), a-ACTIN (Millipore, Mab1501R), b-CATENIN (Sigma, C2206), AK2 (Proteintech, 11014-1-AP), TUJ1 (Biolegend, MMS-435P), NESTIN (BD, 611659), PDGFRa (Santa Cruz, sc-338), O4 (Abcam, Ab53041), MBP (Biolegend, 836501), CNPase (Abcam, ab6319), PCNA (Abcam, ab18197), phospho-AKT ser473 (Cell Signaling, 4058), cleaved caspase-3 (Cell Signaling, 9664), SHMT2 (Abnova, H00006472-B01P), NeuN (Merck, MAB377), OLIG2 (Merck, AB9610), MAP2 (Santa Cruz,sc-20172), APP (Proteintech, 25524-1-AP), SYNAPTOPHYSIN (Proteintech, 17785-1-AP).
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