The largest database of trusted experimental protocols

β actin

Manufactured by Eurofins
Sourced in India, Germany, Japan

β-actin is a protein that is commonly used as a control in various biochemical and molecular biology experiments. It is a structural protein that plays a crucial role in the cytoskeleton of eukaryotic cells. β-actin is often used as a reference gene or protein to normalize and compare the expression levels of other genes or proteins in a sample.

Automatically generated - may contain errors

16 protocols using β actin

1

Quantitative Analysis of RNA Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted from cultured cells by using QIAzol reagent and an miRNeasy Mini Kit. RNA quantity and quality were determined by using a NanoDrop ND-1000 spectrophotometer (Thermo Fisher Scientific). For quantitative reverse transcription polymerase chain reaction analysis, complementary DNA was reverse transcribed from total RNA using a High Capacity cDNA Reverse Transcription Kit (Applied Biosystems). The data were collected and analyzed by using StepOne Software version 2.3 (Applied Biosciences). All messenger RNA quantification data were normalized to the expression data for β-actin. TaqMan probes for SORT1 (Hs00361760_m1 SORT1), LAMP2 (Hs00174474 m1 LAMP2), and β-actin (Hs01060665_g1 ACTB) were purchased from Applied Biosystems. CRBN and β-actin primers were purchased from Eurofins (CRBN forward: TGTGTTGCCTTCAACCATGT; reverse: AGCGAGGCCATGAAGTTAGA, β-actin forward: GGAGGAGCTGGAAGCAGCC; reverse: GCTGTGCTACGTCGCCCTG).
+ Open protocol
+ Expand
2

TGFβ1-Induced Gene Expression in BMMC

Check if the same lab product or an alternative is used in the 5 most similar protocols
BMMC were cultured with or without 10ng/ml of TGFβ1 for 3 days prior to IL-33 stimulation for 2 hours. Cells were harvested and total RNA was extracted with TRIzol reagent (Life Technologies, Grand Island, NY). RNA was quantified using the Thermo Scientific NanoDrop™ 1000 UV–vis Spectrophotometer (Thermo Scientific, Waltham, MA) according to the manufacturer’s recommended protocol. cDNA was synthesized using the qScript™ cDNA Synthesis from Quanta Biosciences (Gaithersburg, MD). BioRad CFX96 Touch™ Real-Time PCR Detection System (Hercules, CA) was used to amplify message using PerfeCTa SYBR Green SuperMix (Quantabio, Gaithersburg, MD). Primers for IL-6 (forward: 5′TCCAGTTGCCTTCTTGGGAC3′, reverse: TCCAGTTGCCTTCTTGGGAC3′), IL-13 (forward: 5′ ATGGCGCTCTGGGTGACTGCAGTCC, reverse: 5′GAAGGGGCCGTGGCGAAACAGTTGC), TNF (forward: 5′AGCACAGAAAGCATCATCCGC3′, Reverse: 5′TGCCACAAGCAGGAATGAGAAG3′), β-actin (forward: 5′GATGACGATATCGCTGCGC3′, Reverse: 5′CTCGTCACCCACATAGGAGTC3′), were purchased from Eurofins MWG Operon (Huntsville, AL). Amplification conditions consisted of a heat-activation step at 95°C for 2 minutes followed by 40 cycles of 95°C for 15 seconds, 55°C for 30 seconds and 60°C for 1 minute. All melting curve analysis was performed between 50°C and 95°C. Results were normalized to housekeeping genes using Livak Method.
+ Open protocol
+ Expand
3

Quantitative Real-Time PCR Primer Design

Check if the same lab product or an alternative is used in the 5 most similar protocols
Quantitative real-time PCR was performed by using the iCycler IQ PCR system (Bio-Rad, Munich, Germany) and the SYBR-Green Mastermix (Invitrogen). Intron spanning primer pairs for nestin and the housekeeping genes RPS18 and β-actin were purchased from Eurofins (Hamburg, Germany). Primer sequences were: Nestin (152 bp mouse): Forward 5´- AGGCTGAGAACTCTCGCTTG—3´, Reverse 5´- TGAGAAGGATGTTGGGCTGA—3´. RPS 18 (167 bp mouse): Forward 5´- TGGTGTTGAGGAAAGCAGACAT—3´, Reverse 5´- GAACCTGGCTGTACTTCCCATC—3´. Nestin (214 bp rat): Forward 5´- GTAGACCCTTGGGTTAGAGGC—3´, Reverse 5´- TGGGCAATTCAAGGATCCCC—3´. β-actin (238 bp rat): Forward 5´- GCCATGTACGTAGCCATCCA—3´, Reverse 5´- GCACGATTTCCCTCTCAGCT—3´.
+ Open protocol
+ Expand
4

Molecular Neurobiology Experimental Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
All chemicals were procured from Sigma-Aldrich (St Louis, MO, USA) unless otherwise indicated. For RT-PCR, primers NR2A, NR2B, m1AChR, α7-nAChR, nNOS, and β-actin were obtained from Eurofins, Bangalore, India. Resveratrol were purchased from Cayman, Germany. Ibotenic acid was purchased from Abcam, Cambridge, UK. Acetylthiocholine iodide and DMSO from Hi-Media, India.
+ Open protocol
+ Expand
5

RAW264.7 Cell Culture and PCR

Check if the same lab product or an alternative is used in the 5 most similar protocols
The RAW264.7 cell was purchased from PromoCell, Germany. The PCR primers for β-actin, IL-1β, IL-6, and TNF-α were purchased from Eurofins MWG Operon, Konstanz, Germany.
+ Open protocol
+ Expand
6

Quantifying Gene Expression via RT-PCR

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total-RNA preparation was performed by using RNAeasy Kit (Qiagen, Hilden, Germany) following the manufacturer’s instructions and 500 ng of RNA were applied to Reverse Transcription (Thermo Scientific, Whaltham, MA, USA). Realtime PCR was done by using QuantiNova SYBR Green PCR Kit (Qiagen) and a final concentration of 0.3 nM gene specific primer. Primers for mRNA expression were purchased from Eurofins Genomics (Ebersberg, Germany):
CX3CL1-F: 5′-CACCACGGTGTGACGAAATG -3′; CX3CL1-R: 5′-TCTCCAAGATGATTGCGCGT-3′; β-actin-F: 5′-CTCTTCCAGCCTTCCTTCCT-3′; β-actin-R: 5′-AGCACTGTGTTGGCGTACAG-3′.
+ Open protocol
+ Expand
7

Validation of miR-1253 Regulatory Targets

Check if the same lab product or an alternative is used in the 5 most similar protocols
Primers for wild‐type 3′UTR CDK6 (forward: 5′‐TCTTCATTCACACCGAGTAGTGC‐3′ and reverse: 5′‐TGAGGTTAGAGCCATCTGGAAA‐3′) and CD276 (forward: 5′‐CTGGCTTTCGTGTGCTGGAGAA‐3′ and reverse: 5′‐GCTGTCAGAGTGTTTCAGAGGC‐3′) were designed (https://www.ncbi.nlm.nih.gov/tools/primer-blast/) and purchased (Eurofins); β‐actin served as the internal control (forward: 5′‐CACCATTGGCAATGAGCGGTTC‐3′ and reverse: 5′‐AGGTCTTTGCGGATGTCCACGT‐3′). Mutations were created within the seed sequence of CDK6 and CD276. Wildtype and mutant 3′UTR genes were PCR‐amplified and inserted into the XbaI restriction site of pGL3‐control vector (Promega). A reporter assay was performed using HDMB03 cells seeded at a density of 3 × 105 cells/well in 12‐well plates. Cells were co‐transfected with pRL‐TK plasmid (Promega), as the internal control, and miR‐1253 mimic or scramble control for 48 h. Luciferase activity was then measured using the Dual‐Luciferase Reporter Assay System with a Luminometer (Biotek). Firefly luciferase activity was normalized to Renilla luciferase activity for each transfected‐cell sample.
+ Open protocol
+ Expand
8

Analytical-Grade Chemicals and Primers

Check if the same lab product or an alternative is used in the 5 most similar protocols
All chemicals utilized in the study were of analytical
grade and procured from SISCO Research Laboratories Private Limited,
D.K. Enterprises, India; Sigma Aldrich, St. Louis, MO, USA; Dako,
Carpinteria, CA, USA; or Argutus, Dublin, Ireland. Primers of KIM-1,
NGAL, and β-actin were procured from Eurofins Genomics, Bangalore,
India.
+ Open protocol
+ Expand
9

Functionalized HA-based Nanoparticles for miR-125b Delivery

Check if the same lab product or an alternative is used in the 5 most similar protocols
Sodium hyaluronate (HA) 20 – 40K was purchased from Lifecore Biomedical Co. (Chaska, MN). N-(3-dimethylaminopropyl)-N’-ethylcarbodiimide hydrochloride (EDC), N-hydroxysuccinimide (NHS), poly (acrylic acid) (PAA) and RPMI-1640 media were purchased from Sigma-Aldrich Chemical Co. (St. Louis, MO, USA). Branched poly(ethyleneimine) (bPEI) 10,000 Da was purchased from Polysciences Inc. (Warrington, PA). Dialysis membrane of 12–14 kDa molecular weight cut-off (MWCO) was obtained from Spectrum Laboratories Inc., CA. Cy5-NHS ester was obtained from Lumiprobe (Hallandale Beach, FL). 4% E-Gel® EX agarose gels were purchased from Thermo Scientific, PA. Fetal bovine serum (FBS) was obtained from HyClone (Logan, UT). MACS Cell Separation kit was purchased from Miltenyi Biotec, San Diego, CA. miR-125b mimic, miR-negative control and penicillin/streptomycin antibiotics were purchased from Life Technologies (Woburn, MA). Antibodies CD45, F4/80, CD11b, CD11c, PD-1, PD-L1, CD80 and CD206 antibodies were obtained from BioLegend (San Diego, CA). Primers specific for iNOS-2, Arg-1, and β-actin were purchased from Eurofins MWG Operon (Huntsville, AL).
+ Open protocol
+ Expand
10

Apigenin Modulates SNAI1 and FOXG1 Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
mRNA expression level of SNAI1 and FOXG1 in A549 cells treated with 50 μM apigenin for 48 h were examined by real-time qRT-PCR. Total RNA (1 μg) was reverse-transcribed using a Roche Transcriptor First Strand cDNA Synthesis Kit (Roche, IN, USA) according to the manufacturer’s protocol. qRT-PCR analysis was performed using Roche LightCycler 480 SYBR Green I Master (Roche) by a LightCycler 480 System II (Roche). Specific primers for real-time qRT-PCR were designed using the website of primer3plus and are as follows: SNAI1: sense 5′-ACCCCACATCCTTCTCACTG-3′ and antisense 5′-TACAAAAACCCACGCAGACA-3′, FOXG1: sense 5′-GTCAATGACTTCGCAGAGCA-3′ and antisense 5′-GTCTGGTCCCAGGGATGTTA-3′ and β-actin: sense 5′-GGA CTT CGA GCA AGA GAT GG-3′ and antisense 5′-AGC ACT GTG TTG GCT TAC AG-3′ (Eurofins Genomics, Tokyo, Japan).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!