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Taqman snp genotyping assay and reverse transcription kit

Manufactured by Thermo Fisher Scientific
Sourced in United States

The TaqMan SNP Genotyping Assay is a real-time PCR-based assay designed for detecting and identifying specific single nucleotide polymorphisms (SNPs) in DNA samples. The Reverse Transcription kit is used for synthesizing complementary DNA (cDNA) from RNA templates, enabling further downstream gene expression analysis.

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5 protocols using taqman snp genotyping assay and reverse transcription kit

1

Quantification of Molecular Markers in Cells

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Anti-GFAP and anti-SOX2 antibodies were obtained from Dako, Agilent (Santa Clara, CA, United States), anti- VDR and anti-aSMase were from Elabscience (Houston, TX, United States) and anti-β tubulin was from Sigma Aldrich (St. Louis, MO, USA). Horseradish peroxidase-conjugated goat anti-rabbit secondary antibodies were from Santa Cruz Biotechnology (Santa Cruz, CA, USA). TaqMan SNP Genotyping Assay and Reverse Transcription kit were purchased from Applied Biosystems (Foster City, CA, USA). RNAqueous®-4PCR kit was from Ambion Inc. (Austin, Texas). SDS-PAGE molecular weight standards were purchased from Bio-Rad Laboratories (Hercules, CA, USA). Chemiluminescence kit was purchased from Amersham (Rainham, Essex, UK).
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2

Recombinant Manganese Superoxide Dismutase Radioprotection

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The rMnSOD radioprotective protein, discovered and obtained in the recombinant form by A.Mancini, was provided by the Molecular Biology and Viral Oncology Unit, Department of Experimental Oncology, Istituto Nazionale Tumori Fondazione G. Pascale—IRCCS, Naples, Italy [15 (link)]. Sterile 2 μg aliquots of rMnSOD in 0.5 mL of sterile saline phosphate buffer (PBS) were prepared and stored at −80 °C. Anti-nSMase, and anti-βtubulin were from Abcam (Cambridge, UK). Horseradish peroxidase-conjugated goat anti-rabbit secondary antibodies were from Santa Cruz. Anti-rMnSOD was from InBios International (Washington, WA, USA). TaqMan SNP Genotyping Assay and Reverse Transcription kit were purchased from Applied Biosystems (Foster City, CA, USA). RNAqueous®-4PCR kit was from Ambion Inc. (Austin, TX, USA). SDS-PAGE molecular weight standards were purchased from Bio-Rad Laboratories (Hercules, CA, USA). Chemiluminescence kits were purchased fromAmersham (Rainham, Essex, UK).
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3

Breast Cancer Cell Line Characterization

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MDA-MCF7 and MDA-MB231 cell lines were from Elabscience Biotechnology (Houston, Texas, USA), and MDA-MD453 was from ATCC (ATCC® HTB-131, Manassas, VA, USA). Cell culture medium (Dulbecco’s modified minimum essential medium, DMEM), fetal bovine serum (FBS), penicillin G, streptomycin, glutamine, and sodium pyruvate were from GIBCO Invitrogen (Carlsbad, CA, USA). FBS lipid-depleted was from Biowest (Nuaillé, France). Human LDL was from Millipore (Burlington, Massachusetts, USA). Anti-nSMase3, anti-β-tubulin, anti-HMGCR and horseradish peroxidase-conjugated goat anti-rabbit secondary antibodies were from Abcam (Cambridge, UK). ER antibody, clone 6F11, was from Leica Biosystems, Newcastle Upon Tyne, United Kingdom. PgR antibody, clone 16, was from Leica Biosystems, Newcastle Upon Tyne, United Kingdom. Ki-67 antibody clone MIB1 was from Agilent Dako, Glostrup, Denmark. 3-[4,5-dimethyl-2-thiazolyl]-2,5-diphenyl-2-tetrazoliumbromide (MTT), Chol standard, nSMase and were from Sigma-Aldrich (St. Louis, MO, USA). TaqMan SNP Genotyping Assay and Reverse Transcription kit were purchased from Applied Biosystems (Foster City, CA, USA). RNAqueous®-4PCR kit was from Ambion Inc. (Austin, TX, USA). SDS-PAGE molecular weight standards were purchased from Nzythech (Lisboa, Portugal). Chemiluminescence kits were purchased from Amersham (Rainham, Essex, UK).
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4

Molecular Mechanisms of Oxidative Stress

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The rMnSOD protein was provided by the Molecular Biology and Viral Oncology Unit, Department of Experimental Oncology, “Istituto Nazionale Tumori Fondazione G. Pascale”—IRCCS, Naples, Italy [34 (link)]. Anti-aSMase, anti-nSMase1, anti-Caspase1, and anti-β-tubulin were obtained from Abcam (Cambridge, UK). Horseradish peroxidase-conjugated goat anti-rabbit secondary antibodies were obtained from Santa Cruz. The TaqMan SNP Genotyping Assay and Reverse Transcription kit were obtained from Applied Biosystems (Foster City, CA, USA). The RNAqueous®-4PCR kit was obtained from Ambion Inc. (Austin, Texas, USA). The SDS-PAGE molecular weight standards were purchased from Bio-Rad Laboratories (Hercules, CA, USA). Chemiluminescence kits were purchased from Amersham (Rainham, Essex, UK).
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5

Evaluating Vitamin D Signaling in Glia

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Cell culture medium (Dulbecco’s modified minimum essential medium, DMEM), fetal bovine serum (FBS), penicillin G, streptomycin, and glutamine, and sodium pyruvate were from GIBCO Invitrogen (Carlsbad, CA, USA). Anti-GFAP antibody was obtained from Dako, Agilent (Santa Clara, CA, USA), anti-VDR from Elabscience (Houston, TX, USA), anti-nSMase1 was from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA, USA), anti-aSMase was from Abcam (Cambridge, UK), anti-β-tubulin and 1α,25(OH)2VD3, 3-[4,5-dimethyl-2-thiazolyl]-2,5-diphenyl-2-tetrazoliumbromide (MTT) were from Sigma Aldrich (St. Louis, MO, USA), horseradish peroxidase-conjugated goat anti-rabbit secondary antibodies and tetramethylrhodamineisothiocyanate (TRITC)-conjugated anti-rabbit IgG were from Santa Cruz. TaqMan SNP Genotyping Assay and Reverse Transcription kit were purchased from Applied Biosystems (Foster City, CA, USA). RNAqueous®-4PCR kit was from Ambion Inc. (Austin, TX, USA). SDS-PAGE molecular weight standards were purchased from Nzythech (Lisboa, Portugal). Chemiluminescence kitswerepurchasedfromAmersham (Rainham, Essex, UK).
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