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4 protocols using 4 6 diamidino 2 phenylindole dapi staining

1

Histological Analysis of Hippocampal Neurons

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HE and Nissl staining were carried out according to the standard protocols. A high-power optical microscope (magnification, ×400) was used to observe the pyramidal neurons in the hippocampal CA1 region. Three randomly selected visual fields were used to indicate the histological changes (22 (link)).
TUNEL staining was performed using an In Situ Cell Death Detection Kit, TUNEL red (Vazyme Biotech Co., Jiangsu, China), and cell nuclei were visualized with 4', 6-diamidino-2-phenylindole (DAPI) staining (Vector, Burlingame, CA, USA). TUNEL-positive cells were detected on 10 randomly selected fields from each tissue. The average number of TUNEL-positive cells in the hippocampal CA1 region per high power field was expressed as apoptosis degree (23 (link)).
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2

Visualizing Hair Cell Explants

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To visualize HCs, OC explants were subjected to FITC-phalloidin staining. Subsequently, the explants were cultured for 24 h and fixed in 4% paraformaldehyde (PFA; Electron Microscopy Sciences, Hatfield, PA, USA; Bas et al., 2012 (link)). Next, the explants were washed three times in phosphate-buffered saline (PBS; Sigma–Aldrich, St. Louis, MO, USA) and incubated in 5% normal goat serum (Sigma–Aldrich, St. Louis, MO, USA) and 1% Triton X-100 (Fluka, St. Louis, MO, USA) in PBS for 90 min at 25°C. Then the samples were washed three times with PBS and incubated with FITC-labeled phalloidin (Sigma–Aldrich, St. Louis, MO, USA) for 90 min at 25°C. Additional three washes were performed with PBS and then the samples were mounted with mounting medium having 4′,6-diamidino-2-phenylindole (DAPI) staining (Vector Laboratories, Burlingame, CA, USA), coverslipped, and viewed under a confocal Zeiss Axiovert 700 microscope (Carl Zeiss Microimaging, LLC, Thornwood, New York, NY, USA).
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Assessing Cell Viability with Fluorescent Stains

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In parallel, AM pieces were used for assessing cell viability at each time point. To this aim, the vital quantifiable fluorescent Calcein AM (C1359 Sigma-Aldrich), propidium iodide (P4864 Sigma-Aldrich), and 4′,6-diamidino-2-phenylindole (DAPI) staining (Vectastain) were used. Briefly, working in the dark, Calcein AM, DAPI, and propidium iodide were consecutively added to the culture medium (45, 5, and 2 min, respectively, before performing the subsequent analysis) according to the manufacturer's instructions. For the fluorescence analysis, Nikon A1r confocal microscope interfaced to a computer workstation, provided with NIS-Elements 4.4 software (for images acquisition) and with NIS-Elements Advanced Research imaging software (for post-processing analysis), was used. Quantification of Calcein AM, propidium iodide, and DAPI fluorescence was performed by using the image-processing software ImageJ, version 1.40g (http://rsbweb.nih.gov/ij). The viability of the fresh AM was taken as 100%. Each experimental group was analyzed in triplicate, and the relative levels of fluorescence were obtained from 10 random fields.
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4

Apoptosis Detection in Blastocysts

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To detect apoptosis, blastocysts were fixed using 4% paraformaldehyde in phosphate-buffered saline (PBS) and subjected to terminal deoxynucleotidyl transferase-mediated dUDP nick-end labeling (TUNEL) assay, using an In Situ Cell Death Detection Kit (Roche Diagnostics GmbH, Mannheim, Germany). The negative control embryos were placed in a well containing FITC label only, without the TUNEL enzyme. The blastocysts were also examined using 4,6-diamidino-2-phenylindole (DAPI) staining (Vector Laboratories, Burlingame, CA, USA), to count the total nuclei versus the apoptotic nuclei.
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