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6 protocols using gel pro analyzer 4

1

Protein Expression Analysis by Western Blot

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Cells were harvested using RIPA lysis buffer (CWBIO, Jiangsu, China) containing protease inhibitor (CWBIO, Jiangsu, China) and incubated on ice for 30 min. Subsequently, WB was performed using the method used in the previous study [24 (link)]. The membranes were incubated with the following primary antibodies: PCK2 (Shenggong, Shanghai, China), METTL3 (Shenggong, Shanghai, China), FTO (Fitzgerald, Acton, USA) and β-actin (Absin, Shanghai, China). Finally, the images were obtained with a Bio-Rad GelDoc system equipped with a Universal Hood III (Bio-Rad, California, USA), and the integrated optical density (IOD) was calculated using Gel-Pro Analyzer 4.0.0.4. Actin was used as an internal control.
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2

Western Blot Analysis of PPARγ Expression

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Total protein from the cell samples was extracted with the Total Protein Extraction Kit (Sangon, Shanghai, China) following the manufacturer’s protocol and protein content was quantified with the BCA Protein Assay Kit. Proteins (40 mg) were resolved on 8–12% SDS-polyacrylamide gels and transferred to a PVDF membrane (Bio-Rad). The PVDF membrane was rinsed with TBS-Tween20 (TBST) and blocked for 2 h in skimmed milk. Then, the membranes were incubated overnight with anti-PPARγ (Santa Cruz Biotechnology,) and anti-β-actin (Abs, Beijing, China) according to the respective instructions. The PVDF membranes were then washed thrice and incubated with the secondary goat anti-mouse IgG (H + L) (Transgen, Illkirch-Graffenstaden, France) for 2 h. The protein bands were incubated with chemiluminescence reagents (Beyotime) after being washed four times. The images were obtained with a Bio-Rad GelDoc system equipped with a Universal Hood III (Bio-Rad), and the integrated optical density (IOD) was calculated using Gel-Pro Analyzer 4.0.0.4. Actin was used as an internal control.
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3

Western Blot Analysis of TMEM126B

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Western blot was conducted as before [27 (link)]. In brief, cells were washed with pre-cold PBS and lysed in lysis buffer (Cell signaling technology, USA) supplemented with 1 mM PMSF (Sigma-Aldrich). Samples were measured the concentration using Pierce BCA Protein Assay kit (Thermo Fisher Scientific) followed by centrifugation at 14,000 × g for 10 min at 4 °C. The protein lysate was denatured with loading buffer for 5 min at 95 °C and loaded onto 10% bis-tris protein gels. Proteins were transferred onto immune-blot polyvinylidene difluoride membrane (BIO-RAD, USA) and blocked with 5% w/v milk. The membranes were incubated with second HRP-conjugated secondary antibodies for 2 h followed by primary antibodies overnight. The protein signals were visualized using SuperSignal West Pico Chemiluminescent Substrate (BIO-RAD) and quantified grayscale measurements in Gel-Pro analyzer 4.0 (USA). The antibodies are as follows: TMEM126B (Abmart, China, 1:1000), β-actin (Santa cruz, USA, 1:2000), Anti-mouse IgG, HRP (Cell Signaling technology, 1:2000) and Anti-rabbit IgG, HRP (Cell Signaling technology, 1:2000).
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4

Nuclear Protein Extraction and Western Blot

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Cells were placed on ice immediately following treatment and washed with ice-cold Hank’s Balanced Salt Solution. Nuclear proteins were prepared using the CellLytic NuCLEAR extraction kit (Sigma-Aldrich). All the wash buffers and final resuspension buffer included a 1× protease inhibitor cocktail (Pierce, Rockford, IL, USA), NaF (5 mM), and Na3VO4 (200 mM). The protein concentration of the lysate was measured using the BCA protein assay kit (Thermo Fisher). Nuclear or total cell proteins were resolved on 8 to 12% SDS-PAGE and transferred by electroblotting to nitrocellulose membranes (Bio-Rad, Hercules, CA, USA). The membranes were blocked in 5% bovine serum albumin reagent (Beyotime, Jiangsu, China) and incubated overnight at 4 °C with primary antibody dilution buffer (the dilution followed the specification; Abcam) and then incubated with horseradish peroxidase-conjugated anti-rabbit IgG (1:5000) for 2 h. Afterward, the membranes were developed using the enhanced chemiluminescence substrate LumiGLO (Millipore, Bedford, MA, USA) and exposed to X-ray film. The bands were analyzed with Gel-Pro Analyzer 4.0 (Bio-Rad, Hercules, CA, USA).
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5

Quantitative Protein Expression Analysis

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The expression of the wild-type and variant SLCO1B1 and SLC22A1 proteins was detected with the tag anti-EGFP mAb (Sangon Biotec, Shanghai, China) according to the typical procedure after the plasmids were transfected into the HEK293 cells. A bicinchoninic acid protein assay was used to quantify the total protein in the samples. The quantitative analysis of the integral OD of the bands in the western blot was performed using a Gel-Pro analyzer 4.0 (BIO-RAD, USA).
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6

Evaluating EMT Markers in Esophageal Cancer

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Western blot analyses were performed on cell lysate prepared from three esophageal cancer cell lines and esophageal tissue as described previously. Equal amount of protein lysate were loaded and separated on 10 % SDS–polyacrylamide gel electrophoresis and then transferred to a PVDF membrane (Millipore, USA). After being blocked by 5 % fat-free milk in TBS buffer, membranes were probed with the following antibodies overnight at 4 °C: mouse monoclonal anti-PFN2 (Abcam; 1:1000 dilution), rabbit anti-E-cadherin (Santa Cruz; 1:200 dilution), rabbit anti-Vimentin (Abcam; 1:1000 dilution), rabbit anti-Snail (Proteintech; 1:500 dilution), rabbit anti-Slug (Proteintech; 1:200 dilution), rabbit anti-ZEB1 (Proteintech; 1:500 dilution) and mouse anti-β-actin (Zhongshan Biotechnology; 1:1000). Bound antibodies were detected with secondary HRP-conjugated antibodies (Santa Cruz) for 2 h at room temperature. After washing, the resulting bands were visualized using the standard ECL procedure (Kangwei, Beijing). Images were acquired using the image acquisition system (BioRad, USA) and their grayscale value was analyzed by the image analysis program (Gel-Pro Analyzer 4.0, USA).
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