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Nickel nitrilotriacetic acid ni nta resin

Manufactured by Qiagen
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Nickel-nitrilotriacetic acid (Ni-NTA) resin is a chromatographic resin used for the purification of histidine-tagged proteins. It consists of nickel ions immobilized on a nitrilotriacetic acid (NTA) matrix, which binds to the histidine tags on recombinant proteins. This resin enables efficient and selective capture of the target proteins from complex mixtures.

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7 protocols using nickel nitrilotriacetic acid ni nta resin

1

Anaerobic Mixed Culture DNA Extraction

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Genomic DNA (gDNA) was collected from KB‐1, a D. mccartyi‐containing anaerobic mixed culture growing on TCE and methanol following the procedure described previously (Duhamel and Edwards, 2006). The PCR primers for amplifying D. mccartyi gDNA were synthesized by Integrated DNA Technologies (Coralville, IA, USA). Luria broth and terrific broth powder were purchased from EMD Chemicals (Gibbstown, NJ, USA), and the Bradford assay reagent from Bio‐Rad (Hercules, CA, USA). Lysozyme, proteinase K, agarose, glycerol, ampicillin, kanamycin, SDS and IPTG were obtained from BioShop (Burlington, ON, Canada), and all other chemicals were purchased from Sigma‐Aldrich (St. Louis, MO, USA) with greater than 98% in purity. Nickel‐Nitrilotriacetic acid (Ni‐NTA) resin and the QIAquick PCR Purification Kit were purchased from Qiagen (Mississauga, ON, Canada), whereas the In‐Fusion PCR Cloning Kit was purchased from Clontech (Palo Alto, CA, USA). The commercially available kits were used according to the manufacturers' instructions.
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2

Bacterial Expression and Purification

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Dithiothreitol (DTT), isopropyl 1-thio-β-D-galactopyranoside (IPTG), Triton X-100, α-ketoglutaric acid sodium salt (αKG), DL-isocitric acid trisodium salt hydrate, and magnesium chloride (MgCl2) were obtained from Fisher Scientific (Hampton, NH). BME was obtained from MP Biomedicals (Santa Ana, CA). β-Nicotinamide adenine dinucleotide phosphate reduced trisodium salt (NADPH), β-Nicotinamide adenine dinucleotide phosphate disodium salt (NADP+) and tris(2-carboxyethyl)phosphine) (TCEP) was purchased from Millipore Sigma (Burlington, MA). Nickel-nitrilotriacetic acid (Ni-NTA) resin was obtained from Qiagen (Valencia, CA). Stain free gels (4–12%) were obtained from Bio-Rad Laboratories (Hercules, CA). Protease inhibitor tablets were obtained from Roche Applied Science (Penzberg, Germany). Phenylmethylsulfonyl fluoride (PMSF) salt was purchased from Thermo Scientific (Waltham, MA). The Escherichia coli BL21 Gold DE3 strain was used for all protein expression.
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3

Recombinant Protein Expression and Purification

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Dithiothreitol (DTT), isopropyl 1-thio-β-d-galactopyranoside (IPTG), Triton X-100, α-ketoglutaric acid sodium salt (αKG), dl-isocitric acid trisodium salt hydrate, and magnesium chloride (MgCl2) were obtained from Fisher Scientific (Hampton, NH). BME was obtained from MP Biomedicals (Santa Ana, CA). β-Nicotinamide adenine dinucleotide phosphate reduced trisodium salt (NADPH), β-Nicotinamide adenine dinucleotide phosphate disodium salt (NADP+) and tris(2-carboxyethyl)phosphine) (TCEP) was purchased from Millipore Sigma (Burlington, MA). Nickel-nitrilotriacetic acid (Ni-NTA) resin was obtained from Qiagen (Valencia, CA). Stain free gels (4–12%) were obtained from Bio-Rad Laboratories (Hercules, CA). Protease inhibitor tablets were obtained from Roche Applied Science (Penzberg, Germany). Phenylmethylsulfonyl fluoride (PMSF) salt was purchased from Thermo Scientific (Waltham, MA). The Escherichia coli BL21 Gold DE3 strain was used for all protein expression.
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4

Lactoferrin-Mediated Protein Interactions

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Two micrograms of recombinant human lactoferrin (OPSA11754; AVIVA Systems Biology, San Diego, CA) and rabbit muscle LDH (LDH-A) (Sigma, St. Louis, MO) were mixed with 2 μg of 6×His-PspAWU2, fragments (F-1, F2, F-3, F-4, or F-5), or recombinant 6×His-PRDs (WU2PRD, TIGR4 PRD, or EF6796 PRD) in buffer A (PBS, 0.1% Triton X-100, 0.5 mM dithiothreitol [DTT], and 10 mM imidazole) and then incubated for 1 h at 4°C on rotator (6 rpm). Nickel-nitrilotriacetic acid (Ni-NTA) resin (Qiagen), 20 μl, was equilibrated in 1 ml of buffer A. Subsequently, Ni-NTA resin and mixtures of proteins were mixed together and incubated for 1 h at 4°C on a rotator (6 rpm). Incubated Ni-NTA resins were washed four times with 1 ml of buffer A containing 20 mM imidazole. SDS loading buffer (2×) was added to the Ni-NTA resins and then incubated at 90°C for 5 min. Proteins were separated on 4 to 12% gradient SDS-PAGE gels (Invitrogen) and visualized by Coomassie blue staining or immunoblots with an anti-LDH antibody (ab130923; Abcam).
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5

Purification of Cysteine-less Glutamate Transporter

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Cysteine-less GltPh (CLGltPh) and double cysteine mutants were transformed into Escherichia coli (E. coli) Top10 cells (Invitrogen). Bacterial cells were inoculated in Luria Broth medium containing 100 μg/mL ampicillin at 37 °C until OD600 ~0.6–0.8. Protein expression was induced with 0.1% L-arabinose and harvested 4 h post-induction. All protein purification experiments were conducted at 4 °C. Membranes were first isolated and solubilized with 10 mM n-Dodecyl-β-D-maltoside (C12M; Anatrace) in binding buffer containing 20 mM HEPES-Tris (pH 7.5), 200 mM NaCl, and 5 mM Na-Asp for 1 h. Proteins were purified using nickel-nitrilotriacetic acid (Ni-NTA) resin (Qiagen) and the histidine tag was subsequently removed by thrombin digestion (10 U/mg of protein). The proteins were further purified by size exclusion chromatography (SEC) using Superdex200 16/60 HiLoad gel filtration column (GE Healthcare). For CLGltPh, GltPh-XL1, the column was equilibrated with SEC running buffer containing 20 mM HEPES-Tris (pH 7.5), 25 mM NaCl, 25 mM KCl, 5 mM Na-Asp and 7 mM n-decyl-β-D-maltopyranoside (C10M; Anatrace). For GltPh-XL2 and GltPh-XL3, the SEC buffer contained 10 mM HEPES-KOH/NaOH (pH 7.5), 100 mM NaCl, 0.1 mM Na-Asp and 7 mM C10M. Proteins were concentrated to 6–7 mg/mL for gel analysis and crystallization.
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6

Purification of Recombinant Proteins

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Dithiothreitol (DTT), isopropyl 1-thio-β-D-galactopyranoside (IPTG), Triton X-100, α-ketoglutaric acid sodium salt (αKG), DL-isocitric acid trisodium salt hydrate, and magnesium chloride (MgCl2) were obtained from Fisher Scientific (Hampton, NH). BME was obtained from MP Biomedicals (Santa Ana, CA). β-Nicotinamide adenine dinucleotide phosphate reduced trisodium salt (NADPH), β-nicotinamide adenine dinucleotide phosphate disodium salt (NADP+) and tris(2-carboxyethyl)phosphine) (TCEP) was purchased from Millipore Sigma (Burlington, MA). Nickel-nitrilotriacetic acid (Ni-NTA) resin was obtained from Qiagen (Valencia, CA). Stain free gels (4–12%) were obtained from Bio-Rad Laboratories (Hercules, CA). Protease inhibitor tablets were obtained from Roche Applied Science (Penzberg, Germany). Phenylmethylsulfonyl fluoride (PMSF) salt was purchased from Thermo Scientific (Waltham, MA).
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7

Purification of Cysteine-less Glutamate Transporter

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Cysteine-less GltPh (CLGltPh) and double cysteine mutants were transformed into Escherichia coli (E. coli) Top10 cells (Invitrogen). Bacterial cells were inoculated in Luria Broth medium containing 100 μg/mL ampicillin at 37 °C until OD600 ~0.6–0.8. Protein expression was induced with 0.1% L-arabinose and harvested 4 h post-induction. All protein purification experiments were conducted at 4 °C. Membranes were first isolated and solubilized with 10 mM n-Dodecyl-β-D-maltoside (C12M; Anatrace) in binding buffer containing 20 mM HEPES-Tris (pH 7.5), 200 mM NaCl, and 5 mM Na-Asp for 1 h. Proteins were purified using nickel-nitrilotriacetic acid (Ni-NTA) resin (Qiagen) and the histidine tag was subsequently removed by thrombin digestion (10 U/mg of protein). The proteins were further purified by size exclusion chromatography (SEC) using Superdex200 16/60 HiLoad gel filtration column (GE Healthcare). For CLGltPh, GltPh-XL1, the column was equilibrated with SEC running buffer containing 20 mM HEPES-Tris (pH 7.5), 25 mM NaCl, 25 mM KCl, 5 mM Na-Asp and 7 mM n-decyl-β-D-maltopyranoside (C10M; Anatrace). For GltPh-XL2 and GltPh-XL3, the SEC buffer contained 10 mM HEPES-KOH/NaOH (pH 7.5), 100 mM NaCl, 0.1 mM Na-Asp and 7 mM C10M. Proteins were concentrated to 6–7 mg/mL for gel analysis and crystallization.
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