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2 nitrophenyl β d galactopyranoside onpg

Manufactured by Merck Group
Sourced in Poland, France

2-Nitrophenyl β-D-galactopyranoside (ONPG) is a colorimetric substrate used in biochemical and microbiological applications. It is a disaccharide composed of galactose and 2-nitrophenol. Upon hydrolysis by the enzyme β-galactosidase, ONPG releases 2-nitrophenol, which exhibits a yellow color that can be detected spectrophotometrically.

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8 protocols using 2 nitrophenyl β d galactopyranoside onpg

1

Saponin Extraction from Diesel Oil

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Growth medium was prepared as described by Dobslaw and Engesser [21 (link)]. For saponin extraction, methanol and buthan-1-ol were used (Avantor, Poland). Hexadecane, toluene, hydrochloric acid, propan-2-ol, ONPG (2-Nitrophenyl-β-d-galactopyranoside), and thiazolyl blue tetrazolium bromide (MTT) were purchased form Sigma-Aldrich (Poland). All chemicals used were of analytical grade. Diesel oil was purchased from a petroleum station (PKN Orlen, Poland).
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2

Bacterial Strain Cultivation Protocols

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Chemicals and growth media X-Gal (5-bromo-4-chloro-3-indoyl-β-D-galactopyranoside) and IPTG (Isopropyl-β-D thiogalactoside) were purchased from Euromedex (Souffelweyersheim, France). ONPG
(2-Nitrophenyl-β-D galactopyranoside) was obtained from Sigma-Aldrich (Lyon, France). PCH was synthetized chemically according to previously published protocols (Youard et al., 2007) (link). LB (Lennox) and LB agar medium were purchased from Difco (Franklin Lakes, New Jersey). Bacteria were grown at 30 C in LB broth or in ironrestricted medium (CAA) as previously described (Cunrath et al., 2015) (link). Ampicillin (Ap; 100 μg ml À1 ), kanamycin (Kan; 50 μg ml À1 ), gentamicin (Gm; 30 μg ml À1 ), chloramphenicol (Cm; 50 μg ml À1 ) and IPTG (0.5 mM) were added when needed. The strains used in this study are listed in Table S1A.
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3

Quantifying β-galactosidase Activity in Azospirillum

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β-galactosidase assay was performed with A. brasilense 2112 and 2119 strains grown in K-malate minimal medium containing 100 μg/mL of tryptophan with an inoculum of a 0.01 (OD600nm) and grown with shaking at 150 rpm and 30°C for 16, 24, and 36 h to obtain exponentially to stationary phase grown cultures. Then, 50 μL of cells were immediately harvested for assays. The β- galactosidase assays were carried out using 2-Nitrophenyl β-D-galactopyranoside (ONPG, 100 μL at 8 mg/mL; Sigma Chemical No. N1127) as the substrate, as previously described [8 (link)]. Data are reported as Miller units by mg of protein from three independent experiments with two biological replicates.
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4

Quantitative β-Galactosidase Activity Assay

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The β-galactosidase assays were modified from a previously reported study [65 (link)]. Overnight bacterial cultures were diluted 1:500 in TSB. If needed, appropriate amounts of oxidants, iron chelators, or FeCl3 were included in the medium. The β-galactosidase activity was monitored by collecting samples at different time points. A total of 100 µL of bacterial culture was added to 900 µL of Z Buffer (60 mM Na2HPO4, 40 mM NaH2PO4, 10 mM KCl, 1 mM MgSO4, pH 7.0, 0.2% β-mercaptoethanol). A total of 1 µL of 0.1% sodium dodecylsulfate (SDS) and 50 µL of chloroform were added to the suspension, which was mixed vigorously for 20 s. The suspension was then incubated for 5 min at 30 °C. A total of 200 µL of 4 mg/mL 2-nitrophenyl β-d-galactopyranoside (ONPG, Sigma) was added to the cells. The reaction was stopped by adding 500 µL of 1 M Na2CO3. The suspension was centrifuged at 14,000× g for 3 min, and the optical densities of the supernatant were read at 420 and 550 nm. The β-galactosidase activity was then calculated in Miller Units (MUs) according to the following equation: MU=1000×OD4201.75×OD550Timemin×VolumemL×OD600
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5

Quantifying Bacterial β-Galactosidase Activity

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β-Galactosidase activity was determined as follows. Bacteria were collected and resuspended in 1 ml of Z-buffer [60 mM Na2HPO4, 40 mM NaH2PO4, 10 mM KCl, 1 mM MgSO4, 50 mM β-mercaptoethanol, pH 7.0], then 40 μl chloroform and 20 μl SDS (0.1%) were added. After 5 min incubation at room temperature, 100 μl of samples were transferred to a 96-well plate and 100 μl of 1.2 mM 2-nitrophenyl β-d-galactopyranoside (ONPG, Sigma-Aldrich). Absorbance at 420 nm for each reaction was determined every 20 s for 20–30 min. β-Galactosidase activity is shown as the rate of ONPG conversion (Vmax) divided by the OD600 values of the samples.
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6

Enzymatic Activity Assessment Assay

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2-aminoanthracene (2AA) and chloropromazine (CPZ) were purchased from Sigma-Aldrich (Poznań, Poland). 2AA were dissolved in DMSO. CPZ was dissolved in deionized water. D-glucose 6-phosphate disodium salt hydrate (G-6-P) (CAS no. 3671-99-6), disodium salt hydrate (CAS no. 3671-99-6), and 2-nitrophenyl β-d-galactopyranoside (ONPG) (CAS no. 369-07-3), which was the β-galactosidase enzyme, were purchased from Sigma Aldrich. Nicotinamide adenine dinucleotide phosphate (NADP) (CAS no. 24292-60-2) was purchased from MP Biomedicals (Irvine, CA, USA). DMSO (CAS no. 67-68-5) was purchased from Avantor Performance Materials (Gliwice, Poland). Methanol (CAS no. 67-56-1) was purchased from Merck (Warsaw, Poland).
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7

Measuring VtrC-Mediated β-Galactosidase Activity

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V. parahaemolyticus strains containing the empty pBAD vector, pBAD-lacZ-vtrC or pBAD-vtrC-lacZ were grown overnight in MLB at 30°C. Overnight cultures were diluted to OD600 nm = 0.6 in MLB supplemented with 0.1% arabinose and induced for 5 hr at 30°C. Bacterial cells were permeablized by mixing 20 μl of bacterial culture with 80 μl permeabilization solution (100 mM Na2HPO4, 20 mM KCl, 2 mM MgSO4, 0.8 mg/ml hexadecyltrimethylammonium bromide, 0.4 mg/ml sodium deoxycholate, 5.4 μl/ml β-mercaptoethanol). 600 μl substrate solution (60 mM Na2HPO4, 40 mM NaH2PO4, 1 mg/ml 2-Nitrophenyl β-D-galactopyranoside (ONPG, Sigma-Aldrich N1127), 2.7 μl/ml β-mercaptoethanol) was added to the samples to start the reaction and the time was recorded as T1 (min). Samples were incubated at 30°C until a pale yellow color develops. The reaction was stopped by adding 100 μl 1 M Na2CO3 and the time was recorded as T2 (min). The supernatant was collected after centrifugation at 20000 x g for 5 min. Measure the OD420nm of the supernatant. β-galactosidase activity was calculated as below:
β-galactosidase activity (Miller unit) = 1000* OD420 nm/0.02* OD600 nm *(T2-T1)
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8

Baicalein Inhibits Bacterial Enzyme Activity

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Different concentrations of baicalein or PB (16 μg/mL) were coincubated with bacterial suspension (OD600 = 0.5) for 30 min (37°C). Then, 190 μL of supernatants (12,000 × g, 15 min, 4°C) was incubated with 2-nitrophenyl-β-d-galactopyranoside (ONPG; 3 mmol/L; Sigma) for 30 min, and OD420 was detected (53 (link)).
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