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33 protocols using novostar plate reader

1

Screening Compounds for ZAC-HEK293 Antagonist Activity

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The screening of the 1,680 compounds in the compound library for antagonist activity at the ZAC-HEK293 cell line was performed in the FMP assay essentially as previously described [33 (link)]. The day before the assay, cells were split into poly-D-lysine-coated black 96-well plates with clear bottoms (BD Biosciences, Palo Alto, CA) (6 × 104 cells/well). The following day, the culture medium was aspirated and the wells were washed once with 100 μl assay buffer (140 mM NaCl, 4.7 mM KCl, 2.5 mM CaCl2, 1.2 mM MgCl2, 11 mM HEPES, 10 mM D-glucose, pH 7.4), after which 100 μl assay buffer supplemented with FMP dye (0.5 mg/ml) and the various test compounds were added to the wells. The plate was then incubated at 37 °C for 30 min and assayed in a NOVOStar plate reader (BMG Labtechnologies, Offenburg, Germany) measuring emission at 560 nm caused by excitation at 530 nm before and up to 1 min after the addition of 33 μl of agonist solution. In the screening, the 1,680 compounds in the compound library were tested at assay concentrations in the 10–30 μM range, using Cu2+ as agonist at an assay concentration of 200 μM.
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2

Screening Compounds for ZAC-HEK293 Antagonist Activity

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The screening of the 1,680 compounds in the compound library for antagonist activity at the ZAC-HEK293 cell line was performed in the FMP assay essentially as previously described [33 (link)]. The day before the assay, cells were split into poly-D-lysine-coated black 96-well plates with clear bottoms (BD Biosciences, Palo Alto, CA) (6 × 104 cells/well). The following day, the culture medium was aspirated and the wells were washed once with 100 μl assay buffer (140 mM NaCl, 4.7 mM KCl, 2.5 mM CaCl2, 1.2 mM MgCl2, 11 mM HEPES, 10 mM D-glucose, pH 7.4), after which 100 μl assay buffer supplemented with FMP dye (0.5 mg/ml) and the various test compounds were added to the wells. The plate was then incubated at 37 °C for 30 min and assayed in a NOVOStar plate reader (BMG Labtechnologies, Offenburg, Germany) measuring emission at 560 nm caused by excitation at 530 nm before and up to 1 min after the addition of 33 μl of agonist solution. In the screening, the 1,680 compounds in the compound library were tested at assay concentrations in the 10–30 μM range, using Cu2+ as agonist at an assay concentration of 200 μM.
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3

Glucose Uptake Assay in Human MoDMs

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Human MoDMs were seeded at 4 × 104 cells well−1 in 96‐well plates and left to attach overnight at 37 °C and 5% CO2. Prior to glucose uptake assays, cells were pre‐treated with inhibitors as described in the figure legends and glucose starved in glucose‐free RPMI‐1640 medium (Agilent) supplemented with 2 mM L‐glutamine (Sigma) for 6 h. Then, cells were treated with 1 nm MCTR1, MCTR2, MCTR3, or vehicle control for 15 min followed by incubation with 25 µg mL−1 2‐Deoxy‐2‐[(7‐nitro‐2,1,3‐benzoxadiazol‐4‐yl)amino]‐D‐glucose (2‐NBDG; Sigma) for 30 min. Cells were washed thrice with PBS to remove free 2‐NBDG and fluorescence was immediately determined in‐plate using a NOVOstar plate reader (BMG Labtech) with FITC filter set.
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4

Fura-2 AM Platelet Calcium Assay

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PRP was loaded with Fura-2 AM (2 µM) for 1 h at 30 °C and then washed platelets were prepared. Fura-2AM-loaded platelets were incubated with PXR ligands or vehicle prior to their activation. The ratio of emission values (excitation at 340/380 nm) was recorded using a NOVOstar plate reader (BMG Labtech) and converted to calcium concentration. Detailed method is available in the supplementary information.
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5

Nanobody Binding Affinity Assay

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The affinity of each nanobody for the unliganded β2AR (KT) was required for TCM data analysis. Briefly, 50 ng of carboxypeptidase-treated (to remove His6 tag), biotinylated β2AR nanodiscs were immobilized per well of a 96-well SigmaScreen Streptavidin plate in binding buffer (20 mM HEPES pH 7.4, 100 mM NaCl, 2 mM EDTA). Following a 3 hr incubation at RT, plates were washed four times with binding buffer and incubated with serial dilutions of nanobody in binding buffer with 0.1% milk for 2 hr at RT. Plates were quickly washed three times with binding buffer and then incubated with polyclonal anti-His HRP-conjugated antibody (1:5000, Abcam) in binding buffer with 0.1% milk for 1 hr at RT. Plates were quickly washed three times with binding buffer and bound nanobody was detected colorimetrically (OD450nm) on a NovoStar plate reader (BMG Labtech) using TMB Ultra 1-step substrate as described by the manufacturer (Pierce).
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6

Nanobody Binding Affinity Assay

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The affinity of each nanobody for the unliganded β2AR (KT) was required for TCM data analysis. Briefly, 50 ng of carboxypeptidase-treated (to remove His6 tag), biotinylated β2AR nanodiscs were immobilized per well of a 96-well SigmaScreen Streptavidin plate in binding buffer (20 mM HEPES pH 7.4, 100 mM NaCl, 2 mM EDTA). Following a 3 hr incubation at RT, plates were washed four times with binding buffer and incubated with serial dilutions of nanobody in binding buffer with 0.1% milk for 2 hr at RT. Plates were quickly washed three times with binding buffer and then incubated with polyclonal anti-His HRP-conjugated antibody (1:5000, Abcam) in binding buffer with 0.1% milk for 1 hr at RT. Plates were quickly washed three times with binding buffer and bound nanobody was detected colorimetrically (OD450nm) on a NovoStar plate reader (BMG Labtech) using TMB Ultra 1-step substrate as described by the manufacturer (Pierce).
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7

Measuring Mitochondrial ROS Production

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The production of ROS in isolated mitochondrial samples was tested using the MitoSOX Stain (ThermoFisher, United Kingdom). Isolated mitochondria were added to a black-walled 96 well plate, spiked with MitoSOX Red (final concentration = 5 µM) and incubated for 15 min in the dark at 37°C 5% CO2. Changes in MitoSOX fluorescence (excitation 510/emission 580 nm) were measured using the BMG Labtech NovoStar plate reader. A baseline was measured for 16 s, at which point antimycin (final concentration 244 µM) or MAB was injected into appropriate wells. Fluorescence was then measured for a further 234 s (total time = 250 s).
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8

Measuring Endolysosomal pH in Primary MEFs

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Primary MEFs were loaded by endocytosis with fluorescein-dextran (pH sensitive) and Texas Red-dextran (pH insensitive) at 0.2 mg/ml in growth medium in 96-well plates at 37°C for 16 h. The cells were washed three times with dextran-free medium and immediately processed. Fluorescence measurements were collected from labeled endo-lysosomes using a Novostar plate reader (BMG Labtech) using excitation/emission of 485/520 nm for fluorescein and 570/620 nm for Texas Red. Autofluorescence (cells not loaded with dextrans) was subtracted from the fluorescein and Texas Red fluorescence. Fluorescein fluorescence (G) was divided by the Texas Red fluorescence (R), and the pH was determined against a standard curve obtained in the following way: dextran-loaded MEFs were equilibrated for at least 10 min in a high-K+ extracellular buffer (5 mM NaCl, 145 mM KCl, 1 mM MgCl2, 1 mM CaCl2, 10 mM glucose) and adjusted to a series of defined pH values in buffers (10 mM acetate for pH 4 to 5, 10 mM MES [morpholineethanesulfonic acid] for pH 5.5 to 6.5, and 10 mM HEPES for pH 7) containing 2 μM nigericin and 2 μM valinomycin. Fluorescence measurements were acquired as described above. Fluorescein- and Texas Red-dextrans (molecular weight, 10,000) were purchased from Invitrogen.
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9

Serum Angiotensin-Converting Enzyme Activity Assay

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Serum ACE activity was measured as described by Beneteau et al [12 (link)]. ACE activity was determined with an artificial substrate (FAPGG, (N-[3-(2-furyl) acryloyl]-L-phenylalanyl-glycylglycine; Sigma-Aldrich) in a reaction mixture containing 25 mM HEPES (N-2-hydroxyethylpiperazine-N-2-ethanesulfonic acid), 0.5 mM FAPGG, 300 mM NaCl, and the desired dilution of serum at pH 8.2. Measurements were performed in 96-well plates (Greiner-Bio One) at 37 °C. Changes in optical density (340 nm) were measured at 5-min intervals for at least 90 min with a plate reader (NovoStar plate reader; BMG Labtech). Optical density values were plotted as a function of reaction time and fitted by linear regression (GraphPad Prism 5.0). The fit and the data were accepted when r2 was >0.90. ACE activity was calculated with the equation: activity=S/kD where S is the rate of observed decrease in optical density (1/min), k is the change in optical density upon the complete cleavage of 1 μmol of FAPGG, and D is the dilution of the serum. ACE activity is given in units where 1 U is equivalent to the cleavage of 1 μmol of FAPGG in 1 min. The reference range for serum ACE level was between 8 and 52 U/L for adults, and between 13 and 100 U/L for children less than 18 years of age.
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10

PI-Based Cell Cytotoxicity Assay

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The PI cell killing assay was done as described before (29 (link), 39 (link)). Briefly, cells plated in a 4-well plate format were incubated in HBSS with PI (30 μM) for 30 min. PI was excited at 530 nm (25 nm band pass) with emission collected at 590 nm (40 nm band pass) using a Novostar plate reader (BMG LABTECH GmbH, Offenburg, Germany). After baseline (A), PI fluorescence was measured every hour (X). To avoid temperature fluctuations, plates were placed in 5 % CO2/air at 37° C between measurements. At the end of the experiments, digitonin (100 μM) was added to label all the nuclei with PI and a final fluorescence reading was collected after 20 min (B). Percentage of dead cells (D) was calculated as D=100(X-A)/(B-A).
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