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3 protocols using criterion tgx 4 20 gels

1

Protein Expression Analysis in Intestinal Cells

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Primary enteric neuronal cells and intestinal Caco-2 cells, along with supernatant, were lysed in 1× Laemmli samples loading buffer (Bio-Rad, Hercules, CA, USA), supplemented with a complete protease inhibitor cocktail (Roche Diagnostics, Mannheim, Germany), and proteins separated on Criterion TGX 4-20% gels (Bio-Rad) according to recommended procedure. Separated proteins were transferred onto Immune-Blot polyvinylidene difluoride (PVDF) membranes (Bio-Rad), according to recommended procedure. The membranes were then probed with anti-BiP (rabbit, #3177, 1:1000, Cell Signaling Technology, Boston, MA, USA), anti-HSP70 (rabbit, #4872, 1:1000, Cell Signaling Technology, Boston, MA, USA), anti-CD91 (rabbit, #26387, 1:1000, Cell Signaling Technology, Boston, MA, USA), and anti-β-actin (mouse, #a5441, 1:5000, Sigma-Aldrich, St. Louis, MO, USA). Horseradish peroxidase-conjugated anti-mouse and anti-rabbit IgG (Cell Signaling Technology) secondary antibodies were used at a 1:2000 dilution. All semi-quantitative measurement of band intensity was performed using the ImageJ analysis software (US National Institutes of Health, Bethesda, MD, USA).
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2

Quantification of Nuclear and Cytosolic Proteins

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Equal concentrations of nuclear and cytosolic protein, as determined by the Pierce BCA Protein Assay Kit (ThermoFisher Scientific), were loaded onto Criterion TGX 4–20% gels (Bio-Rad) and separated via SDS-PAGE gel electrophoresis. Proteins were detected and quantified using antibodies to MDR1 (sc8313) and nucleoporin p62 (sc25523) from Santa Cruz Biotechnology (Santa Cruz Biotechnology, Dallas, TX), nucleoporin p62 (ab95956) from Abcam (Abcam, Cambridge, MA), and α-tubulin (#2144) from Cell Signaling Technology (Cell Signaling Technology, Inc., Danvers, MA). An HRP-linked anti-rabbit secondary (GE Healthcare, Piscataway, NJ) was used for the detection of bound antibodies. Proteins were measured by chemiluminescence using the Clarity bioluminescence kit (Bio-Rad) and imaged on a ChemiDoc System (Bio-Rad). The bands were quantified following removal of background signal using the algorithms in FIJI [25 (link)].These images were cropped and the contrast and brightness adjusted for the entire cropped portion before constructing the figure. P-gp was normalized to nucleoporin in nuclear samples and α-tubulin in cytosolic, microvessel isolate and whole brain cortex samples as previously described [21 (link)].
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3

Western Blot Analysis of JAM-1, Histone Acetylation

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Cells were washed in PBS and lysed in RIPA buffer (St. Louis, MO, USA cat# R0278) supplemented with 10 % phosphatase (Thermo Fisher cat# 1862495) and protease inhibitors (Thermo Fisher cat# 186178). Lysates were then clarified by spinning at 14,000 rpm at 4°C and protein concentration quantified by Bradford assay. 50 μg of protein was boiled in loading buffer for three minutes, electrophoresed in Criterion TGX 4–20% gels (Bio Rad, Hercules, CA, USA cat# 5671095), and transferred to nitrocellulose membranes. Blots were blocked in 5% milk/TBST (20mM Tris pH7.5, 150 mM NaCl, 0.5% Tween 20) solution and stained at 4°C overnight with primary antibodies diluted in 2% BSA (bovine serum albumin)/TBST. The antibodies used were anti-JAM-1 (1:1000; cat#Ab52647 Abcam Cambridge, MA), GAPDH (1:1000; cat#Ab9485 Abcam Cambridge, MA), acetylated histone 3 lysine 27 (Ac-H3-K27; 1:1000; cat#Ab729 Abcam Cambridge, MA), and anti-RV σ-NS (1:1000; provided by Oncolytics Biotech Inc.). Blots were washed three times for 15 minutes with TBST, and stained with horseradish peroxidase (HRP)-conjugated secondary antibodies (diluted 1:4000) for 2 hrs at room temperature. Following two 10-minute washes in TBST, signals were detected with Super Signal HRP substrate (Thermo Fisher cat# 34080).
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